Oxynema aestuarii: HCG48_06555
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Entry
HCG48_06555 CDS
T06528
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oxy
Oxynema aestuarii
Pathway
oxy03030
DNA replication
oxy03410
Base excision repair
oxy03420
Nucleotide excision repair
oxy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCG48_06555 (ligA)
03410 Base excision repair
HCG48_06555 (ligA)
03420 Nucleotide excision repair
HCG48_06555 (ligA)
03430 Mismatch repair
HCG48_06555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oxy03032
]
HCG48_06555 (ligA)
03400 DNA repair and recombination proteins [BR:
oxy03400
]
HCG48_06555 (ligA)
Enzymes [BR:
oxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HCG48_06555 (ligA)
DNA replication proteins [BR:
oxy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HCG48_06555 (ligA)
DNA repair and recombination proteins [BR:
oxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HCG48_06555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCG48_06555 (ligA)
MMR (mismatch excision repair)
DNA ligase
HCG48_06555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCG48_06555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
RNA_lig_T4_1
Zn_ribbon_3
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QIZ70277
UniProt:
A0A6H1TVV0
LinkDB
All DBs
Position
1627867..1629903
Genome browser
AA seq
678 aa
AA seq
DB search
MSTPSVETQEWVKQLRKQLQKASYAYYVLDNPIMEDAIYDRLYRELQDLENQYPQLVTPD
SPTQRVGERPATQFQSVRHNIPLYSLENAFNVEEFAQWQQRWQRVVPKEEFAYVCELKID
GSAIALTYENGILVRGATRGDGEYGEDITQNIKTIRAIPLRLTADPPPAVVEVRGEAFLP
LDVFHKINREREANGEQPFANPRNAAAGTLRQLDSRVVAERHLDCFAYTLHIPGEEETEM
AATQWDALEQLHALGFKVNPNRVLCRSLDEVRDYYDRWEGDREALPYMTDGVVVKLNDKG
LQAELGFTQKFPRWAVALKYAAEEAPTVVEGVTVQVGRTGALTPVAELSPVQLAGTTVSR
ASLHNSDRLAQLDLHLGDTAIVRKAGEIIPEVVRILPELRPQGAIRFQMPDRCPECGEPV
VKPQSEAVTRCINASCPAILRGALIHWGSRDALDINGLGEKLVEQMVDRGLVRSVPDLYD
VTVEELAKLERFGKKSAQNLVNAIAESKTKPWSRVLYGLGIRHVGGVNAQLLAEKFPDVD
RLASASIADIEGIYGIGLEIANSVYQWFRVCANQGAIDRLKTIGVQLSQQPQTETTGDRA
RSSNLTGKTFVLTGTLPSLKRSEAKQIIENAGGKVTGSVSRKTDYVVVGEEAGSKLAKAQ
ELGITLLTEEQLLDLVEN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaacgccctcagtggaaacccaagagtgggtcaaacaactgcgaaaacaactgcag
aaagccagttacgcctactacgtcctcgacaatcccattatggaagatgcgatttacgat
cgcctctaccgggaattgcaagacttagaaaaccaatacccgcaactggtgacgccggac
agtcccacccagcgtgtcggcgaacgacccgccacccaatttcaatcggttcgtcacaat
atccccctctacagcctcgaaaatgcctttaacgtcgaggagttcgcccaatggcagcaa
cggtggcaacgggtcgtccccaaagaagaatttgcgtatgtctgcgagttaaaaattgac
ggttcggcgatcgccctcacctatgaaaacgggattttggtacgcggggcgacccggggc
gatggagaatacggcgaggacattacccagaatataaaaacgattcgggcgattcccctg
cgtctgaccgcagaccctccgcccgccgtcgtcgaagtgcgcggcgaagcctttctaccc
ttggatgtttttcacaaaattaatcgagaacgggaagccaacggggaacagccgttcgcc
aatccgcgcaatgcggcggcgggaaccttgcgccagttagattcgcgggtagttgccgaa
cggcatttagattgttttgcgtatacgttgcatattccaggcgaagaagaaaccgagatg
gcggccacccagtgggacgccctggaacagttgcacgcgctggggtttaaggtcaatccc
aatcgggtcttatgccgatcgctggatgaagtgagagactattacgatcgctgggagggc
gatcgcgaggcgctgccttatatgaccgatggggtggtcgtcaaactcaatgacaaagga
ttgcaagcagaactcggctttacacagaagttcccccgttgggcggtcgccctcaaatat
gccgccgaagaggcgccgaccgtcgtggaaggggtgactgtccaagtcggtcgaacgggg
gcgctgacgcccgttgcggagttgtctccggtgcagttggcggggacgacggtctcgcgg
gcgtcattacacaacagcgatcgcctcgcccaattagacctccatctcggcgatacggcg
atcgtccgcaaagctggggaaattatcccggaagtcgtgcgaattttgccggaattacgc
ccgcaaggggcgattcgcttccaaatgcccgatcgctgtcccgaatgcggcgaacctgtg
gtcaaaccgcaaagtgaggcggtgacgcgctgcattaatgcctcttgtccggcgattttg
cgcggggcactgatccattggggaagccgggatgctttggatatcaacggtttgggagaa
aaattagtcgagcaaatggtcgatcgcggcctcgtgcgatcggtgccggatttatatgat
gttactgtcgaagaattggcgaaattagagcgatttggcaaaaagtcggcgcaaaattta
gtcaacgcgatcgccgaatccaaaactaagccctggtcgcgggtattgtacggcttggga
attcgccatgtcggtggcgtcaacgcccaattattggcggaaaaattccccgatgtcgat
cgtctcgccagtgcctcgatcgccgatatagaagggatttacggcatcggtttggaaatt
gccaattcagtttatcaatggtttcgcgtctgtgccaatcaaggggcgatcgatcgcttg
aaaacgatcggcgtgcagttatcgcaacaaccgcaaacggaaacgacgggcgatcgcgcg
cgatcgtcaaacttaactggaaaaacttttgttcttaccggaacgttacccagtttaaag
cgtagcgaagccaagcaaatcatcgaaaatgcgggaggaaaagttacgggttcggtcagt
cgtaaaacggattatgtagtggtgggagaagaggccggatcgaagttagcaaaagcccag
gaattagggattactttattgacggaagaacagttattagatttagtcgaaaattga
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