Paenimyroides aestuarii: NPX36_13850
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Entry
NPX36_13850 CDS
T09513
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paae
Paenimyroides aestuarii
Pathway
paae03030
DNA replication
paae03410
Base excision repair
paae03420
Nucleotide excision repair
paae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NPX36_13850 (ligA)
03410 Base excision repair
NPX36_13850 (ligA)
03420 Nucleotide excision repair
NPX36_13850 (ligA)
03430 Mismatch repair
NPX36_13850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paae03032
]
NPX36_13850 (ligA)
03400 DNA repair and recombination proteins [BR:
paae03400
]
NPX36_13850 (ligA)
Enzymes [BR:
paae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NPX36_13850 (ligA)
DNA replication proteins [BR:
paae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NPX36_13850 (ligA)
DNA repair and recombination proteins [BR:
paae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NPX36_13850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NPX36_13850 (ligA)
MMR (mismatch excision repair)
DNA ligase
NPX36_13850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NPX36_13850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
RNA_ligase
PTCB-BRCT
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UUV21393
LinkDB
All DBs
Position
complement(2868043..2870052)
Genome browser
AA seq
669 aa
AA seq
DB search
MENANVLAQITLLREELNEHNYNYYVLDQPVISDLEFDQKLKKLQELEQLYPEFFDEDSP
TQRVGGAVTKNFPTIVHENRMYSLENSYSKEDLIDWENRIQRVLGNVPVEYVCELKYDGA
SISITYENGRLVRAVTRGDGFQGDDVTNNIKTIKSVPLKLKGDFPEKFDIRGEIILPLAG
FEKMNMELIDIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYNIVGANNFFNTHAHS
LEAARSYGFKVPNHSKLVKNLDEVFDFISYWDTHRHDLPYETDGVVIKVNDLFQQEELGY
TAKNPRWAIAYKFKAEQASTVLDMISYQVGRTGAITPVANLQPVQLAGTIVKRASLHNAD
QIEKLDVREGDTVFVEKGGEIIPKIVGVDFNQRQPDSQPTEYITHCPECHTELVRKPGEA
QHYCPNFYECPPQIIGRIEHFISRKAMNIDGLGGETVALLYKNGLVKNYADLYELTKEQI
VPLERMADKSADNLLKGIQESKKIPFERVLFALGIRFVGETVAKKLAKHYQSIDALMQAD
YDALVHVDEIGDKIALSIRSFFKNESNLELINRLKNYGLQFEIETKENTQVSTKFEGMTM
VVSGKFETFSRDEIKQKIEDYGGKNGSSITGKTSVVVAGADMGPAKLEKATKLGIPIWTE
EEFINQLEN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgcgaatgttttggcacaaatcactttgttgcgagaggaattgaacgaacat
aattataactattatgtactggatcaaccggtgatttcggatttagagtttgatcagaag
ttaaagaagttgcaggaactagagcagctgtatcctgaattttttgacgaggattcgcca
acgcagcgggtgggtggtgctgttactaaaaattttcctacaattgttcatgaaaaccgt
atgtattctttggaaaattcgtattctaaggaggatcttattgattgggaaaatcgcatt
cagcgtgttttgggcaatgtgcctgttgaatatgtttgtgagctgaaatatgacggtgct
tcgatatcgattacttatgaaaatggtagattggttcgagcggtgacaaggggagatggt
tttcagggcgatgatgtaaccaataatatcaaaacaataaaatcggttcctttaaaatta
aaaggcgactttcctgaaaaatttgatattcgtggggagattatactgcctttggctggt
tttgaaaagatgaatatggaattgattgatattggcgaaacaccttattctaatccaaga
aacacggcttcgggtagtttgaaattgcaagacagtgccgaagttgccaagcgcccgtta
gagtgtttgctttataatattgttggggcaaataatttttttaatacccatgcacattcg
ttggaagcagcgcgttcgtatggttttaaagttcccaatcattctaaactggttaaaaac
ttagacgaagtttttgattttatttcctattgggatacgcatcgccatgatttaccttat
gaaaccgatggtgtggttattaaggttaacgatttgtttcagcaggaagaattgggctat
acggcaaaaaatccgcgttgggcaattgcttataaatttaaggccgaacaagccagcact
gttttggatatgatttcgtatcaagtgggacgtacaggagctattacgcctgtagctaat
ttgcaaccggtgcagttagcaggaacaattgttaaaagagcttctttgcacaatgccgac
caaattgaaaagttggatgtgcgcgaaggcgataccgtttttgtggaaaaaggcggagag
attattccaaaaattgtgggggttgactttaatcagcgacaaccagatagccagcctacg
gaatatattacccactgcccggaatgccacaccgaattggtgcgaaaaccaggtgaagct
cagcattattgtccgaatttttacgaatgtccgccacagattattggtagaattgaacat
tttatcagtagaaaagccatgaatattgatgggctaggaggggaaaccgttgctttgctc
tacaaaaatggattggttaaaaattatgctgatttgtatgaattgacaaaagaacaaatt
gttccactagagcgtatggctgataaatcggctgataacttactgaaaggtattcaagag
tcaaaaaaaataccttttgagcgcgtgctttttgcgttgggaattcgatttgttggtgaa
accgttgctaaaaaactggcgaaacattatcaatctatcgatgctttaatgcaggcagat
tatgatgcattggttcatgtagatgaaattggcgataagattgccttaagtattcggtct
tttttcaaaaatgaatccaatttagaattgataaaccgattgaaaaattatggattgcaa
tttgaaatagaaactaaagaaaatacgcaagtttccacaaaatttgaagggatgacaatg
gttgtttcaggtaagtttgaaacattttctcgtgacgaaatcaagcaaaaaattgaagat
tacggcggaaaaaatggaagttctattaccgggaagacatcggttgtggtggcaggtgca
gatatgggacctgcaaaacttgaaaaagcaaccaagttgggaattccgatttggacagaa
gaggagttcattaatcaactcgaaaattaa
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