Paracoccus sp. AK26: FIU66_07595
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Entry
FIU66_07595 CDS
T08451
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paak
Paracoccus sp. AK26
Pathway
paak03030
DNA replication
paak03410
Base excision repair
paak03420
Nucleotide excision repair
paak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU66_07595 (ligA)
03410 Base excision repair
FIU66_07595 (ligA)
03420 Nucleotide excision repair
FIU66_07595 (ligA)
03430 Mismatch repair
FIU66_07595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paak03032
]
FIU66_07595 (ligA)
03400 DNA repair and recombination proteins [BR:
paak03400
]
FIU66_07595 (ligA)
Enzymes [BR:
paak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIU66_07595 (ligA)
DNA replication proteins [BR:
paak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU66_07595 (ligA)
DNA repair and recombination proteins [BR:
paak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIU66_07595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU66_07595 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIU66_07595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU66_07595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
FlxA
Motif
Other DBs
NCBI-ProteinID:
QIR85083
LinkDB
All DBs
Position
complement(1535566..1537758)
Genome browser
AA seq
730 aa
AA seq
DB search
MADTDRGEGGAGWSDPALLDEKRAGDEIADLAARVAQANEDYHTKDAPVLSDAEYDALKQ
RLLALEQAFPQLARPDSPTQAVGGAVAEGFGKVTHAQRMMSLENGFSAEDVADFVARVRS
FLGLRGDDLSFTAEPKIDGLSLSLRYEDGLLVQAATRGDGTVGENVTANARTIADIPHKL
PDGAPRILEVRGEVYMSHADFERLNAAEGGRVFANPRNAAAGSLRQIDPAVTASRPLRFF
AYGWGELSEPLADTQMGAVERLAALGFQTNPLTRLCRDADQMLAVWAEIEQQRATLGYDI
DGVVYKVNDLSYQTRLGFRSTTPRWALAHKFPAETAWTRLDRIEIQVGRTGALSPVARLE
PVTVGGVVVSNATLHNEDYIAGRDSSGTPIREGRDIREDDWVMVYRAGDVIPKIADVDLS
RRPAGSQPYRFPETCPQCGSDAIREPGDSVRRCTGGLVCPAQAIEKLKHFVSRAAFDIDG
LGAKQIEMFFADPALPIREPADIFTLADRDARSIARLKNREGFGARSVEKLFAAIEDKRR
IPLERLIFALGIRHVGEVAAGILARHFGTWDALIAAVDAAAKEPAFAVPDDKARRQAMAG
SPHWSELTTINGIGAVLVQSLVTTLTQEAERASIDRLTAQIEVIPAKARQVQQTQVSGKT
LVFTGTLERMTRAEAKARAEAMGAKVAGSVSAKTDLLIAGPGAGSKASKAAELGVKVIDE
DEWLRIAGGS
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactgatcggggtgagggcggggcaggctggagtgatcccgcccttctggac
gaaaagcgcgctggcgatgaaatcgccgatctggcggcgcgcgtcgcccaggctaacgag
gattaccataccaaggacgctccggtcctgtcggacgccgaatatgatgcgctgaagcaa
cgtctgctggcccttgagcaagcttttccgcagctggcccgacccgacagcccgacgcag
gcggtcggcggggcggtggcggaaggctttggaaaggtcacacatgcccagcggatgatg
tcgctggaaaacggcttcagcgccgaagatgtcgcggatttcgtggcccgcgtccgaagc
ttcctgggactgcggggcgacgacctgtccttcacggccgaacccaagatcgacggcctt
tccctgtccctgcgctatgaggacgggcttctggtgcaggcggcaacccgtggcgatggc
accgtaggcgagaacgtcaccgccaatgcccgtaccatcgccgacattccccacaagctt
ccggacggcgccccccggatcctggaggttcggggcgaggtatacatgagccatgccgac
ttcgagcgcctgaatgcggccgagggcgggcgggtcttcgccaacccgcgcaatgccgcc
gccggatcgctgcgccagatcgaccccgccgtgaccgcctcgcgtccgctgcggttcttc
gcctatggctggggggaattgagcgagcctctggccgacacgcaaatgggggccgtcgaa
cggctggccgccctcggcttccagaccaatccgctgacgcggctttgccgggatgcggac
cagatgctggcggtctgggccgagatcgagcagcagcgcgccacactgggctatgacatc
gacggggtcgtctacaaggtcaacgacttgtcatatcagacgcggcttggtttccgctcg
accacgccccgctgggctctggcgcacaagttccccgctgaaacggcttggacccggctt
gaccggatcgagatccaggtgggccgcaccggcgcgctgtcgccggtcgcgcggctggaa
cccgtcacggtcggcggcgtggtggtgtcgaacgccaccctgcacaacgaggattacatc
gccggccgcgacagcagcggcacccccattcgcgagggtcgcgacatccgcgaagacgac
tgggtcatggtttatcgcgccggcgacgtgatcccgaagatcgccgacgtggacctgtcc
cgcaggcctgcgggcagccagccctaccgctttcccgaaacctgcccccaatgcggatcg
gacgcgatccgcgagccgggcgattcggtgcgccgctgcaccggcggcttggtctgccct
gcgcaagctatcgagaagttgaagcatttcgtcagccgcgccgccttcgacatcgacggc
ctgggggccaagcagatcgagatgttcttcgcggatccagccctgccgatccgcgaaccc
gccgacatcttcaccctggcagaccgcgacgcccgcagcatcgcgcggctgaagaaccgc
gaaggattcggcgcccgctcggtcgaaaagctgttcgccgccatcgaggacaagcgccgc
atcccgctggagcggctgatcttcgcccttggcatccgccatgtgggcgaggtcgcggca
ggcatccttgcccgccatttcggtacctgggacgcgctgattgcggccgtggacgccgca
gcaaaggaacctgccttcgccgtccccgatgacaaggcccgccgccaggccatggccggc
agcccgcactggtccgagttgacgaccatcaacggcatcggagcggtcttggtccagtcg
ctggtgaccaccctgacccaagaggccgagcgggccagcatcgaccgcctgaccgcgcag
atcgaggtcatcccggcaaaggctcgccaggtgcagcagacccaggtgtccggcaagacc
ctggtctttaccggcacccttgaacgcatgacccgggccgaggccaaggcccgagccgag
gcgatgggcgccaaggtcgcaggctcggtcagcgcgaagaccgacctgctgatcgccggg
ccgggggctgggtccaaggccagcaaggccgccgaactgggcgtcaaggtcatcgacgag
gacgaatggctgcgcatcgcgggcgggtcatga
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