Pectobacterium actinidiae: M9782_19420
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Entry
M9782_19420 CDS
T08879
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pacb
Pectobacterium actinidiae
Pathway
pacb03030
DNA replication
pacb03410
Base excision repair
pacb03420
Nucleotide excision repair
pacb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pacb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9782_19420 (ligA)
03410 Base excision repair
M9782_19420 (ligA)
03420 Nucleotide excision repair
M9782_19420 (ligA)
03430 Mismatch repair
M9782_19420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacb03032
]
M9782_19420 (ligA)
03400 DNA repair and recombination proteins [BR:
pacb03400
]
M9782_19420 (ligA)
Enzymes [BR:
pacb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9782_19420 (ligA)
DNA replication proteins [BR:
pacb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9782_19420 (ligA)
DNA repair and recombination proteins [BR:
pacb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9782_19420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9782_19420 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9782_19420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9782_19420 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
HeH
DUF917
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WEF11301
LinkDB
All DBs
Position
complement(4414573..4416627)
Genome browser
AA seq
684 aa
AA seq
DB search
MKPVKKEPAEVNAAALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELRALEADHP
ELVTSDSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDELTF
CCELKLDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEV
RGEVFMKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTFFCYGVGLL
EGGELPASHKERLMQFKKWGLPVSDKIKLCTGPAEVLDFYRQIEQTRGSLGFDIDGVVVK
VDSLELQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG
VIVSNATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPATVCPIVFPAACPV
CGSDVERVEGEAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKT
PADLFRLSAGIMTGLDRMGPKSAMNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAA
HFGSLEALFAADEEALLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPQVQ
VVNVEEIDSPFAGKTVVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTNMVIAGEAAGS
KLAKAQELGIPVIDEAEMIRLLGA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagtgaagaaagaaccagccgaagtgaatgcggccgcactgcgggtagcggag
ttgcgccgggtcttacgccatcacgaatacaaatatcacgttgaagatgcgcccgaaatt
cctgatgttgaatatgacaaactcatgcaggaattaagagcgttagaggcggatcacccc
gaactggtgactagcgattctccgacgcagcgcgtgggcgcggcaccgctggctgcattt
gaacaggttcgtcatgaagtgccgatgttatcgctggataacgtatttgatgaagagagt
tatcttgccttcagtaagcgaattggcgacaggctgaaaaacggtgatgagctgacattc
tgctgcgagctgaaactggatggtttagccgttagcttgttgtatgaagacggcgttctg
gtacaggctgccacgcgcggggatggcacaaccggagaaaatatcaccagtaacattcgt
accgttgcggcgataccgctgcgccttgagggtgacaatattccgcgtcgtgttgaagta
cgcggcgaagtgttcatgaagcacagcggctttgaaaaactgaacgaagaagctcgccgt
acagggagcaaagtctttgccaacccgcgtaacgccgctgccggatcgctgcgccagctc
gatccacgcattaccgctacacgtccgctgaccttcttctgttatggcgtcggcctgctg
gaaggcggcgagttgcccgctagccacaaagaacggctgatgcagttcaagaagtgggga
ctgccggtgagcgataaaatcaagctctgtaccggtccggctgaggtacttgatttttat
cgtcagattgaacagacccgcggctcgttaggttttgatattgacggcgtcgttgtcaaa
gttgactcgctggaattgcaggagcggttagggttcgttgcccgtgcgccgcgttgggct
gtagcctttaaattcccagcacaggaacagctgacctgggtgcgcgatgtcgaatttcag
gttgggcggacaggtgcgattacgcccgttgcgcgtctggaacccgtcgccgtagctggc
gtgatcgtcagcaacgccacgctgcataatgccgatgaaattgagcggttaggtttgcag
attggcgatcgcgtgattgtgcgtcgagcaggggatgtgatcccgcagatcgtcggtatt
gtagaatctgaacggccagcaacggtgtgcccgatcgttttccctgcggcctgtcccgtg
tgtggatctgacgttgagcgtgtggaaggtgaggctgtcacgcgctgtaccggtggcttg
atctgcggtgcccagcgtaaagaggcactgaagcattttgtttctcgtcgcgcattggat
gtggaaggtatgggcgataagatcatcgatcaactggtggaaaaagagtacgtcaagacg
ccagccgatctgttccgcctgagcgctgggatcatgacgggtctggatcgcatggggccg
aaatccgcgatgaatctggtcaatgccttggaaaaggcgaaaagcaccacgctggcgcgc
ttcctctatgcgttggggatccgcgatgttggcgaatcaacggcggcgaatctggctgcc
cattttggttcgctggaagcgctttttgctgctgatgaagaggcgctgctagaggtgccg
gatgtcggtaaagtcgttgctgcacatgtgcgtcatttccttgaggaagagcacaaccaa
actgtgatccgcgagctgaccgatcccgcaggcatcaacattcactggcctcaagtgcag
gtcgtcaatgttgaagagatcgacagtccatttgccgggaaaacggtggtattgaccgga
tcgctgagtgttttgtctcgcgatgaagccaaagatcggctaacggcgttaggggcaaaa
gtgagtggcagtgtctcgaagaaaaccaatatggtgatcgccggtgaagccgcaggctct
aagctagcgaaggcgcaagaattggggatcccagtgatcgatgaggcggaaatgatccga
ctattgggggcgtaa
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integrated database retrieval system
