KEGG   Cutibacterium acnes hdn-1: TIA1EST1_07955
Entry
TIA1EST1_07955    CDS       T03470                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pacn  Cutibacterium acnes hdn-1
Pathway
pacn03030  DNA replication
pacn03410  Base excision repair
pacn03420  Nucleotide excision repair
pacn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pacn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TIA1EST1_07955
   03410 Base excision repair
    TIA1EST1_07955
   03420 Nucleotide excision repair
    TIA1EST1_07955
   03430 Mismatch repair
    TIA1EST1_07955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pacn03032]
    TIA1EST1_07955
   03400 DNA repair and recombination proteins [BR:pacn03400]
    TIA1EST1_07955
Enzymes [BR:pacn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TIA1EST1_07955
DNA replication proteins [BR:pacn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TIA1EST1_07955
DNA repair and recombination proteins [BR:pacn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TIA1EST1_07955
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TIA1EST1_07955
   MMR (mismatch excision repair)
    DNA ligase
     TIA1EST1_07955
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TIA1EST1_07955
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH Nlig-Ia PTCB-BRCT NHase_beta_N BRCT_2
Other DBs
NCBI-ProteinID: AID36248
LinkDB
Position
complement(1716534..1718795)
AA seq 753 aa
MNAQLCELRKDGTMVDDSTQGGELEASEAGAEARHHWTELAQRILDAQDAYYARDAPTIS
DAEYDRLMVELKKVEDDHPELRTPDSPTQRVGAPQRITDFAPVKHLERLLSLDNVFTRDE
LSEWMNRVATAVGKIPNFLCELKIDGLAVDLVYRDGQLVSGATRGDGRIGEDVTANVRTI
AAIPRKLTGDDVPRLLEVRGEVFFPVADFTDLNAALIEAGKNPFANPRNAAAGSLRQKDS
RVTASRPLSMIVHGIGVLEGHDFPSQGHAYDKLAQWGLPVSPYFKIVEHVDEVHEFVTRW
GESRDEASHQIDGVVVKVDDVSLQRKLGATSRAPRWAIAYKYPPEEVNTELLDIRVNVGR
TGRVTPYGVMRPVTVAGSTVEMATLHNAFEVKRKGVLIGDTVVLRKAGDVIPEILGPVVE
LRNGTEREFLMPDHCPSCGAELAYEKNGDKDLRCPNAQGCPSQLHERVFGLASRGALDIE
ALGWEAAIALTDPENQRPGDDEVAEELPKRQTAVLSSEAGLFDLQLDDLAEVKVWRRRKV
NGGPGPWQLEPYFFTKATAKKPSTPTATTKKMFDELAKAKSQPLWRVLVALSIRHVGPTA
ARALATHFGSVEAIREASVEELAGVDGVGEIIAESVKRWFEVDWHQEIISRWAAAGVRMA
DDRDEAPEQTLEGLTVVVTGSLEGFSRDEAKEAIVSRGGKAAGSVSRKTDYVVVGENAGS
KETKARDLGRPILDEAGFRYLLENGPQGITTIG
NT seq 2262 nt   +upstreamnt  +downstreamnt
gtgaatgcacaactatgtgaactgcgcaaagatgggactatggttgacgattccacccaa
ggtggcgagctggaggcgagcgaggctggggccgaagcgcgccaccactggactgagttg
gcccagcgcatccttgacgcccaggacgcttactatgcccgcgacgctcccacgatctct
gatgccgaatacgaccggcttatggttgaactcaagaaggtggaggacgaccatccggag
ttgcgcactcccgactcgcccactcagcgggttggagctccacaacggataacagatttc
gccccggtcaaacacctcgaacggctactgagcctggacaacgtctttacccgcgacgaa
ctgtcagaatggatgaacagggtcgctactgccgtcggaaagatcccgaatttcctctgc
gagctgaagattgacgggttggcggtcgacctcgtctaccgagacgggcagcttgtatcc
ggggcgacacgcggtgatggccgtatcggtgaggacgtcaccgcgaacgtgcgtacgatc
gcggctataccccggaaactgactggcgacgacgtccctcgtctgcttgaagttcggggc
gaggtatttttcccggtcgctgatttcaccgacctcaacgctgccctcatcgaggcaggt
aagaacccctttgctaacccgcgcaatgcggctgccggttcgctgcggcagaaggactct
cgggtgacggcgtcccggcctctgtcgatgatcgtccacggtattggggtgctggaaggt
cacgatttccctagccaggggcatgcctacgacaagcttgcgcagtgggggttacccgtc
tcgccgtacttcaagatcgtggagcatgtcgatgaggtacatgagttcgtgacccgctgg
ggcgagtcccgcgacgaggcctcccaccagattgacggcgtggtggtcaaggttgatgat
gtctctttgcagcgcaagctgggtgccacctcgcgagctccccggtgggccatcgcatat
aaatacccgcctgaagaagtcaacaccgagctccttgatatccgcgtcaatgttggaagg
accggtcgtgtcaccccgtacggggtcatgagaccggtaacagttgccgggtccaccgtc
gagatggctaccctccacaacgctttcgaggtcaagcgcaaaggagtgctcattggcgac
accgtggtgctgcgcaaggctggtgacgttattccggaaatccttggcccggtggtggag
ctgcgtaacggcactgagcgggagtttcttatgcccgaccactgcccgagctgtggggca
gagctggcctacgaaaagaacggtgacaaggatcttcgctgccctaatgctcaaggttgt
ccctcccagctacacgagcgggtcttcggattagcgtcacgtggcgccctcgacatcgaa
gctcttggttgggaggccgccatcgctctgactgatccggaaaaccagcgcccgggtgat
gacgaggtcgctgaggaacttccgaaacgacaaacggcagtgctgagctccgaggctggt
ctgttcgacctgcagctcgacgatctcgccgaggtcaaagtatggcgtcgtaggaaagtt
aacggcggcccaggcccctggcagcttgaaccctatttcttcacgaaggcgacagcgaaa
aagccgtcgactccgactgccacgaccaagaaaatgttcgacgagttagcgaaggccaag
tctcagccgttgtggagagtgctggtcgccctgtctatccgtcatgtcggaccaacggcg
gcccgggctctggccacccacttcgggtcagttgaggccatccgggaagcgtccgtcgag
gaacttgctggagtcgatggggtgggtgagattatcgccgaatcggtcaagcgatggttc
gaagtcgactggcatcaggagattattagtcgatgggccgcagcgggagtgcggatggcc
gacgatcgtgacgaggcccctgagcagaccctcgaggggttgactgtggtcgtcacggga
agtctggagggattcagccgtgacgaggcgaaggaggccatcgtctcgcgcggaggaaaa
gcggctggatccgtctcccgaaagactgactacgtcgtcgtgggggagaatgccggatcc
aaggaaaccaaggcgcgagacctgggccgtcccatccttgacgaggccgggttccggtat
ttgcttgaaaacggtccgcaggggatcacaaccatcgggtga

DBGET integrated database retrieval system