Paraburkholderia acidiphila: FAZ97_06275
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Entry
FAZ97_06275 CDS
T07262
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pacp
Paraburkholderia acidiphila
Pathway
pacp03030
DNA replication
pacp03410
Base excision repair
pacp03420
Nucleotide excision repair
pacp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ97_06275 (ligA)
03410 Base excision repair
FAZ97_06275 (ligA)
03420 Nucleotide excision repair
FAZ97_06275 (ligA)
03430 Mismatch repair
FAZ97_06275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacp03032
]
FAZ97_06275 (ligA)
03400 DNA repair and recombination proteins [BR:
pacp03400
]
FAZ97_06275 (ligA)
Enzymes [BR:
pacp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAZ97_06275 (ligA)
DNA replication proteins [BR:
pacp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAZ97_06275 (ligA)
DNA repair and recombination proteins [BR:
pacp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAZ97_06275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAZ97_06275 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAZ97_06275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAZ97_06275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
Hint
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QGZ54551
UniProt:
A0A7Z2G3R2
LinkDB
All DBs
Position
1:1402478..1404547
Genome browser
AA seq
689 aa
AA seq
DB search
MVRTPARPPEEAPAAQHAVWLRAELERANHAYYVLDQPELPDAEYDKLFGELQQIEAAHP
DLITPDSPTQRVGGEVAGGFEPVVHDVPMLSLNNGFADEDIVAFDKRVTDALGKIEGAEV
GAVEYAAELKFDGLAISLRYVDGVFVQASTRGDGATGENVTENVRTIRSLPLRLKGKRVP
KALDVRGEVLMFRRDFERMNQRQRDAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAY
GIGVLEGEPMPATHSELLDWYAEMGLPVNAERAVVKGAQGLLEFFRAVGEKRDGLPYDID
GVVYKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLLAIDVQVGRTGAITPVARLEP
VFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALMDRRPADAQEFVMP
TECPVCGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVDQ
NLVRTPADLFNLGFGTLAQLDRMADKSAQNLLDSLEKAKSTTLARFIYALGIRHVGESTA
KDLAKHFGSLDPIMSASVEELLEVNDVGPIVALAIHEFFAEAHNRTVIEQLRAPGKVTWA
EGPPAPKAPVGVLAGKTVVLTGTLPTLSRDEAKEMLEAAGAKVAGSVSKKTDYVVAGADA
GSKLAKAEELGVPVLDEEGMRKLLEGQTT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggtccgtacccccgcccgtcctcccgaagaagcccccgctgcgcagcacgcggtgtgg
ttgcgcgccgaactcgagcgtgcgaatcacgcctactatgtgctcgaccagccggagctg
cccgacgcggaatacgacaagctgttcggcgagcttcagcagatcgaggccgcgcatccc
gatctcatcacgcccgactcgcccactcagcgcgtgggcggtgaggtcgccggcggcttc
gagcccgtggtgcacgatgtgccgatgctctcgctcaacaacggctttgccgacgaggac
atcgtcgcgttcgacaagcgcgtgaccgatgcgctcggcaagatcgagggcgcggaagtc
ggcgcggtcgaatacgccgccgaactcaagttcgacggcctcgccatctcgctgcgctat
gtcgatggcgtgttcgtccaggcgtccacgcgcggcgacggtgcgaccggcgagaacgtc
acggagaacgtgcgcacgatccggtcgctgccgttgcgcctgaagggcaagcgcgtgccg
aaagcgctcgacgtgcgtggcgaggtgctgatgttccgccgcgacttcgagcgcatgaac
cagcgtcagcgcgacgccggtcacaaggaatttgcgaacccgcgcaacgcggcggcgggc
agcctgcgtcagctcgatccgaagatcacggcgcagcggccgctctcgtttttcgcttac
ggcattggcgtgctcgagggcgagccgatgccggccacccatagcgaactgctcgactgg
tacgcggaaatgggcctgccggtcaatgccgaacgtgcggtcgtgaagggcgcgcaaggc
ttgctcgaattcttccgcgcggtcggcgagaagcgcgacggcctgccgtacgacatcgac
ggcgtggtctacaaggtgaaccgccgcgacgagcaggacgcgctcggcttcgtttcgcgc
gcgccacgtttcgcgcttgcacacaagtttccggcccaggaagcgctcacgaagctgctg
gccatcgacgtgcaggtaggccgcactggcgcgattacgccggttgcgcggctcgaaccc
gtgttcgtcggcggcgcgacggtgaccaacgccacgctgcacaacgaagacgaagtgcgc
cgcaaggacatccgcatcggcgatacggtgatcgtgcggcgcgccggcgacgtgattccc
gaagtggtcagcgcgctcatggaccgccgtccggccgacgcccaagagttcgtgatgccg
accgaatgcccggtctgtggatcgcgcatcgagcgtctgcccgacgaggcgatcgctcgc
tgcacgggcggtctgttctgtccggcgcagcgcaagcaggcgctctggcacttcgcccag
cgccgcgcgctcgatatcgatggcctgggcgagaagatcatcgaccagctggtcgaccag
aacctcgtgcgcacgccggccgatcttttcaacctcggcttcggcacgctcgcgcagctc
gatcgcatggccgacaaatcggcgcaaaacctgctcgactcgctcgaaaaggccaaatcc
acgacgcttgcgcgcttcatctacgcgctcggcatccggcacgtgggcgagtcgacggcc
aaggatctcgccaaacactttggctcgctcgacccgatcatgagcgcgtcggtcgaggaa
ctgctcgaagtgaacgatgtggggccgatcgtcgcgctcgccattcacgagttttttgcg
gaagcgcataaccgcacggtgatcgagcaactgcgcgcgcccggcaaagtaacatgggcg
gaaggtccgcccgcgcccaaggcgccagtgggcgtgctggccggcaagaccgtggtcctc
accggcacgctgcccacgctttcacgcgacgaggcgaaggagatgctggaggcggccggc
gcgaaggtggccggctcggtgtcgaagaagaccgattacgtggtggcgggcgccgacgcg
ggcagcaagctcgcaaaagccgaggaactcggcgtgccggtgctcgacgaagaaggaatg
cgcaagctcctggaggggcaaacgacatga
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