Pigmentiphaga aceris: FXN63_10715
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Entry
FXN63_10715 CDS
T06198
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr03030
DNA replication
pacr03410
Base excision repair
pacr03420
Nucleotide excision repair
pacr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FXN63_10715 (ligA)
03410 Base excision repair
FXN63_10715 (ligA)
03420 Nucleotide excision repair
FXN63_10715 (ligA)
03430 Mismatch repair
FXN63_10715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacr03032
]
FXN63_10715 (ligA)
03400 DNA repair and recombination proteins [BR:
pacr03400
]
FXN63_10715 (ligA)
Enzymes [BR:
pacr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FXN63_10715 (ligA)
DNA replication proteins [BR:
pacr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FXN63_10715 (ligA)
DNA repair and recombination proteins [BR:
pacr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FXN63_10715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FXN63_10715 (ligA)
MMR (mismatch excision repair)
DNA ligase
FXN63_10715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FXN63_10715 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QEI06258
UniProt:
A0A5C0AV83
LinkDB
All DBs
Position
2484546..2486597
Genome browser
AA seq
683 aa
AA seq
DB search
MTDLPAGQDAETLARTRVTALREDIEAHNHRYHVLDAPIISDVEYDKLFRELQALEAEFP
LLADPDSPTQRVGAAPLAQFDVVRHRVPMLSLGNGFEDADVESFDARVRDGLDRDSVDYA
CELKFDGLAISLRYENGRFVQAATRGDGEAGEDVTANIRTLRGIPLKLRGEAPAVLEVRG
EVLLFREDFAKLNAAQGERGEKVFINPRNAAAGSLRQLDPRITARRPLRFFAYGWGEIEG
QVPHTTHSAMMGWLEALGFPVNGERKVVTGAQGLLEFYRDIQTRRPDLAYDIDGVVYKVD
SLAAQRTLGFVSRAPRFALAHKFPAEEATTELLRIEFQVGRTGAITPVARLAPVFVGGVT
VTNATLHNEGEIHRKDVRAGDTVVVRRAGDVIPEVVAPVLEKRPDGAVPFVMISQCPVCG
SAVEKPEGEIIARCTGGLFCAAQRKQAVLHAVQRRALDIEGLGEKLIDQLVDTDRVKTLA
DLFTLNAETLAELPRMGAKSAENVVAAIQAARTPPLGRFLFSLGIRHVGESTARDLAKRL
GSLQAVMDASEATLLEVPDVGPIVAASIHRFFAEAHNREVVQALLDNGVTPGQETVAASG
GGAQGVLAGKTLVLTGSLPTLSRDQAAELIQGAGGKVSGSVSKKTHYVVAGEDAGSKLTK
AQELGVTILDEDGLHALLAGSTE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgactgatctgcctgccggccaggatgccgaaacccttgcacgcacccgcgtgacagcg
ttgcgcgaggatatcgaagcacataaccaccgttatcacgtgctcgatgcaccgatcatc
agcgatgtcgaatacgacaagctgttccgcgagttgcaggcgctggaagccgaattcccg
ctgttggccgatcctgattcgcccacgcagcgcgtaggtgccgcgccgctagcccaattc
gacgtggtgcgtcaccgtgtgcccatgctgtccttgggcaatggttttgaagacgcggac
gtagagagtttcgatgcacgtgtgcgtgacggcctggatcgtgattctgtcgattacgcc
tgtgaattgaaattcgatggcctggcgatcagtctgcgttatgaaaacggccgttttgtg
caagccgcgacgcgcggtgatggtgaggctggagaagacgtcaccgccaatatccgcacc
ttgcgtggcattccactgaaactgcgcggcgaagcacctgccgtgctggaagtgcgcggt
gaagtgctgctgttccgcgaagattttgccaagttgaatgccgcccagggcgagcgcggt
gagaaggtgttcatcaatccccgcaatgccgcggccggcagcctgcgtcagcttgacccg
cgcatcaccgcgcgccgtccgctgcgtttctttgcgtatggctggggcgagatcgaaggc
caggtgccgcacaccacgcacagcgcgatgatgggctggctggaagcgcttggattcccg
gtcaatggcgagcgcaaggtcgtcacaggtgcgcaaggtttgctggaattctaccgagac
atccagacgcgtcgtcctgatctggcctacgacatcgacggtgtcgtctacaaggtggac
agcctggccgcgcaacgcacgctgggctttgtttcgcgcgcaccgcgctttgcactggcg
cacaaattcccggccgaagaagccaccaccgagctgctgcggatcgagttccaggtgggg
cgcaccggtgcaatcacgccggttgcgcgactggccccggtgtttgtcggtggcgtcact
gtgaccaacgcaacgctgcacaacgagggtgaaatccatcgcaaggatgtgcgtgcgggc
gacaccgtggtggtgcgacgcgcgggcgatgtgatccccgaagtcgttgcccccgtgctc
gaaaaacgcccggacggggcggtgccgtttgtgatgatcagccagtgcccggtgtgcggc
tcggcggttgaaaagcccgaaggcgagatcattgcccgctgtactggtggcctgttctgc
gcagcccagcgcaagcaagccgtgttgcatgcggtgcagcgccgcgccttggatatcgaa
ggcctgggtgaaaagctgatcgatcaactggtcgacaccgatcgcgtcaagacgctggca
gacctgttcacgctgaatgccgagactctggccgaactgccgcgcatgggtgccaagtct
gccgagaatgtggtggctgccattcaagccgcacgcacgccgcccctggggcgtttcctg
ttctcgctgggcattcgccacgtgggcgaatccaccgcgcgcgacttggccaaacgcctg
ggctcgctgcaagcggtgatggacgcaagcgaagcgactttgctggaagtgcctgacgtc
ggcccgatcgtggccgcatcgattcatcgtttctttgccgaagcccataaccgcgaagtc
gtgcaggccttgctcgacaacggcgtgacaccgggccaggaaaccgtggcagcaagcggt
ggtggcgcgcaaggcgtactggccggcaagacgctggtgctgaccggcagcctgccaacg
ctgtcacgcgatcaggccgccgagctgattcaaggtgcgggcggcaaggtcagcggttcg
gtatcgaagaagacccactatgtggtggctggcgaagatgccggcagcaaactcaccaaa
gctcaggaactgggcgtgaccattctggacgaggacgggctgcacgccttgctcgccgga
tcgacggagtag
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integrated database retrieval system
