Paraburkholderia acidisoli: FAZ98_06150
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Entry
FAZ98_06150 CDS
T07287
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03030
DNA replication
pacs03410
Base excision repair
pacs03420
Nucleotide excision repair
pacs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ98_06150 (ligA)
03410 Base excision repair
FAZ98_06150 (ligA)
03420 Nucleotide excision repair
FAZ98_06150 (ligA)
03430 Mismatch repair
FAZ98_06150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pacs03032
]
FAZ98_06150 (ligA)
03400 DNA repair and recombination proteins [BR:
pacs03400
]
FAZ98_06150 (ligA)
Enzymes [BR:
pacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAZ98_06150 (ligA)
DNA replication proteins [BR:
pacs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAZ98_06150 (ligA)
DNA repair and recombination proteins [BR:
pacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAZ98_06150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAZ98_06150 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAZ98_06150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAZ98_06150 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Hint
Motif
Other DBs
NCBI-ProteinID:
QGZ61344
UniProt:
A0A7Z2JFC6
LinkDB
All DBs
Position
1:1419683..1421734
Genome browser
AA seq
683 aa
AA seq
DB search
MVRHPARPSEEAAAEERAAWLRAEIERANHAYYVLDQPDLPDAEYDKLFGELQQLEAAHP
ELIAPDSPTQRVGGEAAGGFEPVVHDVPMLSLNNGFADEDIAAFDKRVADTLDKTEVEYA
CELKFDGLAISLRYVDGQFVQASTRGDGTTGENVTENVRTIRSLPLRLKGKRVPKVLDVR
GEVLMFRRDFERMNQRQRDAGQKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLD
GEPMPATHSELLDWYDELGLPVNSERAVVKGAQGLLEFFRAVGEKRDALPYDIDGVVYKV
NRRDEQDTLGFVSRAPRFALAHKFPAQEALTTLLAIDVQVGRTGAITPVARLEPVFVGGA
TVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAREFVMPTACPVC
GSHIERLPDEAIARCTGGLICPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTP
ADLFNLGFGTLAQLDRMADKSAQNLLDSLEKAKSTTLARFIYALGIRHVGESTARDLAKH
FGSLTPIMDASIEALLEVNDVGPIVALAIHEFFAEEHNRIVIEQLRAPGKVTWPEGPPAP
RAPVGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK
AEELGVAVLDEEGMRKLLEGQTT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggtccgtcatcccgcccgtccgtccgaagaagccgccgctgaagagcgcgcggcgtgg
ttgcgcgccgaaatcgaacgcgccaatcacgcctactacgtgctcgaccagccggatctg
cccgacgcggaatacgacaagctgttcggcgaactgcaacagctcgaagcggcgcatccc
gagctgatcgcgccggattcgcccacccagcgcgtgggcggcgaggccgcgggcggcttc
gagcccgtcgtccatgacgtgccgatgctgtcgctcaacaacggtttcgccgacgaggac
atcgccgcgttcgacaagcgcgtggccgacacgctcgacaaaaccgaggtcgaatacgcg
tgcgaactgaagttcgacggcctcgcgatctcgctgcgctatgtcgacggccagttcgtc
caggcgtccacgcgcggcgacggtacgaccggcgagaacgtcaccgaaaacgtgcgcacg
atccgctcgctgccgttgcgcctgaagggcaagcgcgtgccgaaggtgctcgacgtgcgg
ggcgaagtgctgatgttccgccgcgacttcgagcgcatgaaccagcgtcagcgcgacgcc
ggtcaaaaggaattcgcgaatccgcgtaacgccgcggcggggagtctgcgccagctcgat
ccaaagatcacggcgcagcggccgctgtcgttcttcgcgtatggcatcggcgtgctggac
ggcgagccgatgccggctacgcatagcgagttgctcgactggtacgacgagcttgggctg
ccggtgaacagcgagcgcgcggtggtgaagggcgcgcaagggctgctggagtttttccgc
gcggtgggcgagaagcgcgacgcgttgccatacgacatcgacggcgtggtctacaaggtg
aatcgccgcgacgagcaggacacgctcggcttcgtctcgcgcgcgccgcgtttcgcgctc
gcgcataaatttcccgcgcaggaagcgctcacaacactgctggcgatcgacgtgcaggtg
ggccgcacgggcgcgatcacgccggttgcgcgcctggagcccgtgttcgtcggcggggcg
accgtcaccaatgccacgctgcacaacgaagacgaagtgcgccgcaaggacattcgtatc
ggcgacacggtcatcgtgcggcgcgccggcgacgtgattcccgaagtcgtgagcgcgctg
ctcgaccgccgcccggccgacgctcgcgaattcgtgatgccgacggcgtgccccgtgtgc
ggctcgcacatcgagcgcctgcccgacgaagccatcgcgcgctgcacgggcggcctgatc
tgcccggcgcagcgcaagcaggcgctctggcatttcgcacagcgccgcgcgctcgacatc
gacgggctcggcgaaaagatcatcgaccagctcgtcgaacagaacctcgtgcgcacgccc
gccgacctgttcaatctcggcttcggcacactcgcgcaactcgaccgcatggccgacaaa
tcggcgcagaacctgctggattcgctcgaaaaagccaagtccacgacgctcgcgcgcttt
atctatgcgctcggcatccgccacgtgggcgaatccacggcgcgcgatctcgccaaacat
ttcggttcgctcacgcccatcatggacgcgtcgatcgaggcgttgctcgaagtgaacgac
gtgggtccgattgtcgcgctcgcaattcacgagttctttgcggaagaacataaccgcatc
gtgatcgagcaactgcgcgcgccgggcaaggtcacatggccggaaggtccgcccgcgccc
agggcgccggtcggcgtgctggccggcaagaccgtggtgctcaccggcactttgcccacg
ctcacgcgggaagccgcgaaggaaatgctggaagcggccggcgcgaaggtggccggctcg
gtgtcgaagaagacggactacgtggtggcgggcgccgacgcgggcagcaaactcgcgaaa
gccgaggaactcggcgtggcggtgctcgacgaagaaggaatgcgcaagctcctggagggg
caaacgacatga
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