Candidatus Pseudomonas adelgestsugas: C3B55_00858
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Entry
C3B55_00858 CDS
T05857
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pade
Candidatus Pseudomonas adelgestsugas
Pathway
pade03030
DNA replication
pade03410
Base excision repair
pade03420
Nucleotide excision repair
pade03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pade00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C3B55_00858 (ligA)
03410 Base excision repair
C3B55_00858 (ligA)
03420 Nucleotide excision repair
C3B55_00858 (ligA)
03430 Mismatch repair
C3B55_00858 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pade03032
]
C3B55_00858 (ligA)
03400 DNA repair and recombination proteins [BR:
pade03400
]
C3B55_00858 (ligA)
Enzymes [BR:
pade01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C3B55_00858 (ligA)
DNA replication proteins [BR:
pade03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C3B55_00858 (ligA)
DNA repair and recombination proteins [BR:
pade03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C3B55_00858 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C3B55_00858 (ligA)
MMR (mismatch excision repair)
DNA ligase
C3B55_00858 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C3B55_00858 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QAX82168
LinkDB
All DBs
Position
complement(1513127..1515475)
Genome browser
AA seq
782 aa
AA seq
DB search
MIATHDHILKLRAELDQHNYHYHVLDEPSISDAEYDCLFRNLKALEAAHPELVTRNSPTQ
RIGGTALLAFTKVKHEIPMLSLGNAFDATTMVEFDRLVVEALDLPIEDDCTTVEYSCEPK
LDGLAVSLLYRNGELVRGATRGDSTIGEDVSINVRTVRNIPLKLHGSGWPINMEVRGEVF
ISKAGFKRLNVSQMEVGGKIFANARNAAGGSLRQLDSKITASRPLEFCCYSVTTDICATH
TDNLQQLQNWGMPISHELKLANGIQNCLDYYRDIKERRNSLPYEIDGAVFKVNSIALQRK
LGFRTREPRWAIAYKFPSMETLTELVDVAFQVGRTGIITPVARLKPVKLTGVLVSSATLH
NMDEIARLGVMIGDTVIIHRAGDVIPQVVSVVIERRPENAYAVQMPESCPVCGSPVERTK
LVKRRKGKEIVSNGVLYRCARRLTCSAQLKQSIIHFVSRRAINISGLGDKTIEQLVDKKL
ICSPADIYKLKPEQIITLQGVADIASRKLIVAIKNSKMPTLARFIYALGIANVGEEIAKV
LAQSLLSLERVQKALPEVLTYLPDVGLEVAHEIRSFFDDSYNQGIISMLLSPDECGLQLQ
NQLDLSAPFTISATLGSLLDKLHIPSIGSGVAQKLANRFSSLEGVVNADWLEMRHILPAK
QAKAVRNFFNNSDNTNYAIAIEQQLKDFGMHWQSKKKFVKNLPEVGHTWVLTGSLKLISR
TLVKDMLESLGAKVVSSVSARTYCVVAGLGATSNLAKAAQLGLQVLDEEEFVSFLAKHNI
TV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgattgctacccatgaccatattcttaaactacgcgctgaattagatcagcataactac
cattaccatgtacttgacgaaccaagtatctcagacgctgaatatgactgtttgtttcgc
aatcttaaggcactggaagctgcgcatcctgagctagtgacacgtaattcgccgacacag
cggattggtggtacagcgctgttagcgtttaccaaggttaaacatgaaattcctatgctt
agcttgggtaacgcgtttgatgcaactactatggtcgagtttgatcgcctggttgtcgaa
gctctcgatttaccaattgaagatgattgtaccacggtagaatacagttgcgaacctaag
ctagacggtctagctgttagtttattatatcgaaatggcgagttagtacgtggcgctaca
cgtggcgacagcactatcggtgaagacgtcagcattaatgtgcgcacagtacgcaatatt
ccgcttaaattgcacggtagtggttggccaataaacatggaagtgcgtggcgaagtgttt
atatctaaagctggctttaaacggctgaatgtgtcgcagatggaagttggtggtaagatt
tttgctaatgcgcgtaatgctgctggtggcagcttgcgacagctagattcgaagattacc
gctagccgcccactagagttttgctgctatagtgtgactactgatatttgcgctacccat
accgataatttgcagcagctgcagaattggggtatgcctattagtcatgagctaaagctg
gccaatggtatccaaaattgtcttgattattatcgtgatatcaaagaacggcgcaacagt
ctgccgtatgagattgatggcgcggtatttaaggtcaatagcattgcattgcaacgtaaa
ctgggttttcgcacccgtgaaccgcgttgggctattgcgtataagttcccgtctatggag
acgttgaccgagctagttgacgtagcatttcaggttggccgtactggtattataacgccg
gtagcacgcctgaaaccagtgaagcttactggtgtcctagtatctagtgccactttacat
aacatggacgaaatagcgcgtcttggtgtaatgattggtgatactgtgattatccaccgt
gctggtgacgtaattccgcaagtcgtgtcagtagttattgagcgtcgcccagaaaatgct
tatgccgtacaaatgcctgaaagttgtccagtgtgtggttctccagtggagcgcacaaag
ttagtcaaacgcagaaaaggtaaggaaatcgtaagcaatggcgtattataccgctgtgct
aggcgcttgacctgtagtgcgcaactcaagcagtcgattattcattttgtctcacgccgc
gctataaatattagcggtctaggcgacaaaactattgagcaactagtggataaaaagctt
atttgctctcctgcagatatctataaacttaagcctgaacagattatcactttacaaggc
gttgctgatattgctagcaggaaattgattgtagctattaaaaatagcaagatgccgacc
ttagcacggtttatctatgccttgggcattgctaacgttggtgaggagatcgctaaggtg
ttggcgcaatcgctgttatctctagaacgcgtacaaaaggccttaccggaagtgctgacg
tatttaccagatgtaggactagaagtggcgcatgaaattcgtagtttttttgacgatagc
tataatcaaggtattattagtatgctgctttcgccagatgaatgcggcctgcaattacag
aatcagcttgacctaagcgctccatttaccattagcgccactttgggcagcttgcttgat
aagttacatattccgagtattgggtctggcgttgcgcaaaaacttgcgaataggtttagc
agtctagaaggcgtcgtcaatgctgattggcttgagatgcgccatattctaccagcaaaa
caggctaaggctgttcgaaattttttcaataactctgacaatacgaattatgccattgct
atcgaacagcagctcaaagattttggtatgcattggcaaagtaagaagaagtttgttaaa
aacttgccggaagtagggcatacttgggtgttaaccggctcactaaagttaataagccgt
actttagttaaagacatgctggaaagcttgggagccaaggtagtcagttcagtttctgca
agaacttattgcgtagttgccggattaggcgccacatcgaacttagctaaagctgctcag
cttggccttcaggtgttagatgaagaggagtttgtctccttcctggccaagcacaatatt
actgtttaa
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