Paenibacillus sp. FSL H7-0357: H70357_32275
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Entry
H70357_32275 CDS
T03358
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paeh
Paenibacillus sp. FSL H7-0357
Pathway
paeh03030
DNA replication
paeh03410
Base excision repair
paeh03420
Nucleotide excision repair
paeh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H70357_32275
03410 Base excision repair
H70357_32275
03420 Nucleotide excision repair
H70357_32275
03430 Mismatch repair
H70357_32275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paeh03032
]
H70357_32275
03400 DNA repair and recombination proteins [BR:
paeh03400
]
H70357_32275
Enzymes [BR:
paeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H70357_32275
DNA replication proteins [BR:
paeh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H70357_32275
DNA repair and recombination proteins [BR:
paeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H70357_32275
NER (nucleotide excision repair)
GGR (global genome repair) factors
H70357_32275
MMR (mismatch excision repair)
DNA ligase
H70357_32275
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H70357_32275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
DUF669
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIQ20825
UniProt:
A0A089ICI1
LinkDB
All DBs
Position
complement(7002387..7004399)
Genome browser
AA seq
670 aa
AA seq
DB search
MDVMHTMEELVAELNQYNYHYYTLDAPQVSDKEYDVLYDKLVALEAESGIVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWNTRVLRLVNDYNTKNPETPLPEPCYAVE
LKFDGLTLNLTYRDGVLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGLIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPKTTANRRLNAFFYNVGYAEGVQFADHQ
EMMNFLRTNQFKVNPYLTYFANFDEVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREAL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEESDGGEIVFPENCPSCGFPLEMRGA
HLFCNNKLDCKPQIIGRITHFASRDAMDIETFSDKTAGQLHEELNVREPADLYELNFEQL
VKLDRFGEKKADNLLKALEESKGRDLASFLFALGIPNTGKATTRMLADHYRSLEAVMSAT
AEELSGLPDIGGIVAESIVGFFADPFVVTGINRMLALGVEAKAPEAPRPVSTDSFFSGKT
VVLTGSLQKLTREEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQVIED
EEELIRLLEI
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacgttatgcatacgatggaagagcttgtggctgagctgaatcaatacaattaccat
tattacacgctggatgcaccgcaggtcagcgacaaggaatatgatgtgctttacgataag
ctggtggccctggaagcggagagcggcattgtgctgccggattctcctacccagcgtgtg
ggaggggaactgctgaaaggctttaccccgcatcgtcaccttgctccgctatggagtttg
gacaaagcgcagaatattgagcagctgcggagctggaatacccgtgtgctgcgcctcgtg
aacgactacaacacgaagaatccggaaacacctctgcccgagccttgttatgccgtcgaa
ctgaaattcgacggcctgaccctgaacctgacctaccgtgacggtgtgttagtgcaggcg
gcaacaagaggaaatggagtgacgggtgaaggcatactggctcaggtgaagacgatcaag
tccgttccattgacgattccgttcaaggaaggtcttatcgaagtgcagggcgaggggatt
atgaacctttcggtgctggccgactacaatacaagggctgccgaaccgctgaagaatgca
cgcaatggcgccgccggagcactgcgcaaccttaatcctaagactacggcgaaccgcagg
ctaaatgctttcttttataacgtgggttatgctgaaggggtacagtttgccgatcatcag
gagatgatgaatttcctgcggaccaaccagtttaaggtgaatccgtacctcacctacttc
gctaactttgacgaggttacagagcagctggcggagattgaagagagccgttccggtctg
gactatctgattgacggtgcggtaatcaaggttaccgatttccgtatccgtgaagcactg
ggttataccgataagtttccgcgctgggcggttgcctacaagtttgaagctgaagaaacg
acgaccatattggagtcagtcagctggaatgtaggccgcacaggcaaagtcacacctctg
gcccgtgtggaggcggtagaactggctggagttactgtccagaactgcacgctgaacaac
gtcggagatattgaacgcaagaatcttaagcatgcgctgggcacgcgggtgtttatccgc
cgctccaatgatgtcattccagagatacttggcaaggtgacggaagaaagcgacggcggg
gaaattgtattccccgagaattgtccgtcatgtggtttcccgctcgaaatgcgcggggcg
catcttttctgcaacaacaagctggattgcaagccgcagattatcggacggatcacccat
ttcgcttcccgtgatgcgatggacattgagaccttcagcgacaagacggccgggcagctg
cacgaagagctaaatgtgcgggagcctgccgatttatatgaactgaactttgaacagctg
gtcaagctcgatcgcttcggtgaaaagaaagcggacaatttgctgaaggcgctggaagag
agcaaagggcgtgatctagcctcgttcctctttgccctaggcattccgaataccggcaaa
gcaaccacacggatgctggccgatcattaccgcagtctggaggcggtaatgtccgcaact
gcagaggaactatctggattgccggatatcggcgggattgtggcagagagcatcgtgggc
tttttcgctgatccttttgtggtaacgggcattaaccgcatgctggctttgggtgtagaa
gctaaggcgcctgaggctccacggccggtgagtaccgattccttcttcagcggcaagacc
gtagtgttaaccggctcgctgcagaagcttacccgtgaggaagctgcggaacgtctcgag
gcacttggcgccaaagtatcgggcagtgtctccaagaaaaccgatctggtcatcgccggt
gaaaaagcgggcagtaagctggccaaagcacagcaattgggcattcaggtcattgaggat
gaggaagaattgatccggctgctggagatttaa
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