Paenisporosarcina cavernae: D3873_10730
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Entry
D3873_10730 CDS
T05647
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paek
Paenisporosarcina cavernae
Pathway
paek03030
DNA replication
paek03410
Base excision repair
paek03420
Nucleotide excision repair
paek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D3873_10730 (ligA)
03410 Base excision repair
D3873_10730 (ligA)
03420 Nucleotide excision repair
D3873_10730 (ligA)
03430 Mismatch repair
D3873_10730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paek03032
]
D3873_10730 (ligA)
03400 DNA repair and recombination proteins [BR:
paek03400
]
D3873_10730 (ligA)
Enzymes [BR:
paek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D3873_10730 (ligA)
DNA replication proteins [BR:
paek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D3873_10730 (ligA)
DNA repair and recombination proteins [BR:
paek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D3873_10730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3873_10730 (ligA)
MMR (mismatch excision repair)
DNA ligase
D3873_10730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D3873_10730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
Nlig-Ia
5_3_exonuc
RRM_fung
Motif
Other DBs
NCBI-ProteinID:
AYC30300
UniProt:
A0A385YVJ1
LinkDB
All DBs
Position
complement(2078121..2080124)
Genome browser
AA seq
667 aa
AA seq
DB search
MNPEELKQRVKELHQQLHDMGYAYYVLDKPIVSDAVYDQYLNELISIEEQNPDLILPDSP
TQRVGGKVLEGFQKVTHRYPMLSLANAFGRDDLDEFDRRIRAVIGDNVEYVCELKIDGLA
ISLQYEDGAFVQGATRGDGQIGEDITENLRTIRSIPLRLKENVSIEVRGEAYMPKKSFNG
LNEAREANGEEKFANPRNAAAGSLRQLDTKLAAQRNLAIFIYGIGGDGEAYQIDSHAEAL
DYLDTLHFPTNKERRTCTTIDEVEAYIQEWTEKRASLPYEIDGIVIKVNRYMHQQELGFT
AKSPRWAVAYKFPAEEVTTKLRDIELTVGRTGVITPTAILDPVLVAGTTVGRASLHNEDL
IREKDIRIGDTVIIRKAGDIIPEVVSVLENERDGSEAEFHMPTECPVCESELVRVEGEVA
LRCVNPQCPAQVTEGIIHFVSRNAMNIDGLGEKVVEQLFRESLIEDVSDLYSLTKETLLP
LERMGEKSAENLVAAIEASKQNSLERVLFGLGIRHVGEKAAKILASEFETMDKLMQADES
QLTAIHEIGEKMANSIVQFFDNEEVQQLIERLKNAGVNMTYLGKRQAIPEDSSWAGKTVV
LTGKLSQLTRQEAKDKLEALGATVTGSVSKKTDLVIAGEEAGSKLDKANSLGIEVWTEQQ
MMDEIDV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatccggaagagctgaaacagcgtgtaaaagagttacaccaacagctacatgatatg
ggatacgcttattatgtgttagataaaccgattgtgtcagatgctgtgtatgatcagtat
ttaaatgaattaatctcgattgaagaacaaaatccagatctaattttgccggattcaccc
acccagcgtgttggtggaaaagtgttagaagggtttcaaaaagtcacccatcgttatccg
atgttaagtctagcgaatgcttttggtcgggatgacttggacgaatttgatcgacgaatt
cgtgccgttataggagataatgtcgaatacgtatgtgagttaaaaattgatgggcttgcc
atctccttacaatacgaagatggggcgtttgttcaaggagctacccgtggagacggtcaa
ataggtgaagatattacggaaaatcttcgaaccattcgttccattccgctacgattgaaa
gaaaatgtcagtattgaagttcgtggcgaagcttacatgcctaaaaaatcgtttaatggg
ttaaatgaagctcgagaagcaaatggtgaagagaaatttgcaaaccctcgaaatgcagca
gcaggttctttgcgtcaactggatacaaaacttgcagcacaacgaaatttagcgattttt
atttatggtattggtggagacggcgaagcgtatcaaatcgattcacatgccgaggcactc
gattatttagacacacttcatttcccgacaaacaaagaacgtcgcacgtgtacgacgatt
gatgaagtggaagcctatattcaagaatggacggaaaaaagagcgtcgcttccatatgaa
attgatggcatcgtcattaaagtaaatcgatatatgcaccagcaagagctagggtttaca
gcaaaaagccctcgttgggcggttgcctacaaattcccggcagaagaagttacaacgaaa
ctccgtgacattgaattgacggtaggtcgaacgggagtcattacaccgactgccatatta
gatccggtgttagttgctggtacaacagttggtcgtgcttctcttcacaatgaagaccta
attcgtgaaaaagatattcgcattggggatacggtcattattcgtaaagcaggcgatatc
atacctgaagttgtgtcagtgttggaaaatgaacgagacggttcagaagcagaatttcat
atgccaacggaatgtcctgtgtgtgagagtgagcttgttcgagttgaaggggaagttgcc
ctacgatgcgtcaatccacaatgtcctgcacaagtgacagaaggaattattcacttcgtt
tcccgcaatgcgatgaatattgatggacttggggaaaaagtggtggaacaactctttaga
gagtcgctgatcgaagatgtgtcagatctttattcccttacaaaagaaacgcttcttccg
ctggagcgcatgggcgagaaatcagcagagaatttggtcgctgctattgaagcatcgaaa
caaaattcgctcgagcgcgtcctatttggactcggtattcgtcacgtcggggaaaaagca
gcgaaaattctagcgagtgaattcgaaacgatggacaagcttatgcaagcagacgagtcg
cagctaaccgccattcatgaaattggcgagaaaatggcgaattcgattgtgcagtttttt
gataatgaagaagtacaacagctaatcgagcgactgaaaaatgccggggtgaatatgacg
tatcttggaaaacgtcaagcaattccggaagattcatcgtgggcaggaaagacagtcgtt
ttaacagggaaattgtcacagcttacacgccaagaagcaaaagataaattagaagcgctc
ggtgcgactgttacaggaagtgtcagcaaaaaaacagatttagtgattgcaggtgaagaa
gctggttctaaattagataaggcaaattcacttggtattgaagtctggacagaacaacaa
atgatggatgaaatagacgtataa
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