Paenibacillus sp. FSL R5-0912: R50912_31045
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Entry
R50912_31045 CDS
T03334
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paeq
Paenibacillus sp. FSL R5-0912
Pathway
paeq03030
DNA replication
paeq03410
Base excision repair
paeq03420
Nucleotide excision repair
paeq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paeq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R50912_31045
03410 Base excision repair
R50912_31045
03420 Nucleotide excision repair
R50912_31045
03430 Mismatch repair
R50912_31045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paeq03032
]
R50912_31045
03400 DNA repair and recombination proteins [BR:
paeq03400
]
R50912_31045
Enzymes [BR:
paeq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R50912_31045
DNA replication proteins [BR:
paeq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R50912_31045
DNA repair and recombination proteins [BR:
paeq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R50912_31045
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50912_31045
MMR (mismatch excision repair)
DNA ligase
R50912_31045
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R50912_31045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
DUF669
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AIQ43934
UniProt:
A0A089LGU6
LinkDB
All DBs
Position
complement(7036029..7038041)
Genome browser
AA seq
670 aa
AA seq
DB search
MDMMFTMEELVAELNQYNYHYYTMDAPQISDKEYDALYDKLVALEAESGIVLPHSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRTWNARVLKLVNDYNTKNPENPLPDPCYAVE
LKFDGLTLNLTYRDGVLVQAATRGNGVTGEGILAQVKTIKSVPLNIPFKEGLIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPKMTADRRLNAFFYNVGYSEGVQFADHQ
EMMDFLRSNRFKVNPYLNYFSNFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREAL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPENCPACGFPLEMRGA
HLFCNNKLDCKPQIVSRITHFASRDAMDIETFSEKTAAQLHEELSVREPADLYELTFEQL
VKLDRFGEKKADNLLQALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEAVMSAT
AEELAGLPDIGGIVAESIVNYFADPFVVVSINRMLALGVEAKAPEAPRVVSTNTFFSGKT
VVLTGSLQKMTREEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQVIED
EDELIRLLEM
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatgttcacgatggaagagctcgtagccgagctgaatcaatataactatcat
tactatacaatggatgcgccgcagatcagcgacaaggaatatgatgcgctctacgacaag
ctggtggcgctggaagcggagagcggaattgtactgccgcattctccaacccagcgagta
ggcggggaactgctgaagggcttcacgccacaccgccatctggcaccattgtggagtctt
gacaaggcgcagaacattgaacagctgcgtacctggaacgcccgtgtgctgaagctggtg
aatgactacaataccaagaatccggagaatcctctgcctgacccgtgttacgcggtggag
ctgaagtttgacggcttaacgctgaacctgacctaccgtgacggcgtacttgtccaggcg
gcaacacggggcaacggcgtaacaggcgaaggtatccttgctcaggtgaagacgatcaaa
tccgttcctttgaacatcccgttcaaggaagggctgatcgaagtgcagggcgaggggatc
atgaacctgtctgttctggctgactataatacacgtgcggcggagccgctgaagaatgca
cgtaacggtgcagccggcgcactgcgcaacctgaatccgaagatgactgcagaccgcaga
ttgaatgccttcttttataatgtggggtactcggagggtgtgcagtttgccgatcaccag
gaaatgatggatttccttcgcagcaaccggttcaaggtcaacccgtatctcaattacttc
agtaatttcgatgacgttaccgagcagctggctgagatcgaagagagccgttccggcctt
gattatctgattgacggggcagtcatcaaggtgacagatttccggatccgtgaagcacta
ggctatacagataagttcccccgctgggcggttgcctataaattcgaggcggaagaaacc
acgacaatcctggagtcggtcagctggaacgtaggccgtactggcaaagtgacgccactg
gcacgggtagaggctgtggagctggcaggtgttactgtgcagaattgcacacttaacaac
gtgggagacattgaacgcaagaacctgaagttcgcgctgggcacacgggtattcatccgc
cgctccaatgatgtgattccggagattctgggcaaggtgacggaagagagtgacggcggg
gagattattttccctgagaattgtccggcctgcgggttcccgctggagatgcgcggtgcg
catctgttctgcaacaacaagctggactgtaaacctcagattgttagccggatcacgcat
ttcgcgtcacgcgatgccatggatattgagacattcagtgagaagacggctgctcagctg
catgaagagcttagtgtacgtgagccggccgatctatatgaattgaccttcgagcaactg
gtgaagctggaccgtttcggggagaagaaggcggataatctgctccaagcactggaagag
agcaaagggcgggatctcgcttccttcttatatgccctcggtatcccgaataccggaaag
gctaccaccagaatgctggctgaccactaccgcagtctggaagctgtaatgtccgcaacg
gcggaggagctggcgggtctgccggatatcggcgggattgtagcggagagcatcgtgaat
tattttgccgacccgtttgtggttgtaagcattaaccgcatgctggcgctgggtgtagag
gctaaggcgcccgaagctccgcgtgtagtcagtacgaatactttctttagcggcaaaacc
gttgtgttgaccggttctctgcagaaaatgacccgcgaggaagcggccgagcgtctggag
gctctcggggctaaggtgtccggcagtgtctccaagaaaaccgatctggtcattgccggc
gagaaggcaggcagcaagctggctaaagcgcagcaactcggcattcaggtcattgaggat
gaagatgaactgatccggcttttggagatgtag
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integrated database retrieval system
