Paraneptunicella aestuarii: KIH87_09335
Help
Entry
KIH87_09335 CDS
T07748
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paew
Paraneptunicella aestuarii
Pathway
paew03030
DNA replication
paew03410
Base excision repair
paew03420
Nucleotide excision repair
paew03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KIH87_09335 (ligA)
03410 Base excision repair
KIH87_09335 (ligA)
03420 Nucleotide excision repair
KIH87_09335 (ligA)
03430 Mismatch repair
KIH87_09335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paew03032
]
KIH87_09335 (ligA)
03400 DNA repair and recombination proteins [BR:
paew03400
]
KIH87_09335 (ligA)
Enzymes [BR:
paew01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KIH87_09335 (ligA)
DNA replication proteins [BR:
paew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KIH87_09335 (ligA)
DNA repair and recombination proteins [BR:
paew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KIH87_09335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIH87_09335 (ligA)
MMR (mismatch excision repair)
DNA ligase
KIH87_09335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KIH87_09335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UAA40515
LinkDB
All DBs
Position
2252075..2254132
Genome browser
AA seq
685 aa
AA seq
DB search
MQEQEDLFSNSHDSEPASRINELKSTLEDYNYQYYVLDNPTVTDAEYDRLMRELVELEKS
NPELLTSDSPSQKVGGAPLPEFQQVTHEVPMLSLDNAFSEDEMRAFEKRMLDRLKRSITL
TYCCEPKLDGLAVSLLYEDGKLVRGATRGDGTVGEDITQNVRTIKNIPPRLRGEQYPQRV
EVRGEVFMPLAGFEKLNQEQAVQGKKIFVNPRNAAAGSLRQLDSRITAKRPLMFNAYSMG
LVEGEKEELADTHYDRLQQLREWGLPVSKEIRQASGVEECLDYYRELGNKRPELGYEIDG
VVFKVNDLAIQEELGFVARAPRWAIAQKFPAQEEMTTLLDVDFQVGRTGAITPVARLEPV
FVGGVTVSNATLHNQDEIERLGVKKGDTVIIRRAGDVIPQVVSVVLEKRPDDAQDIVFPE
HCPVCDSHIERTEDQAVARCTGGLVCKAQRKEAIKHFVSRKALDVDGLGDKLIEQFVDLG
WIETPADLFKLDIAQVAALERMGEKSAANIDKALDAAKKTTLAKFIYSLGIREVGEATAA
NLANHFLTLEALLQADIAALQEVDDVGEVVAQHVVHFFGEARNREVIQQLQDAGVHWPQI
EKKSQDEQPLIGKTFVITGTLSSMGRNDAKARLQDLGAKVAGSVSANTDYLVAGEKAGSK
LTKAQELGVEVMTEEQMLALFSEHE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacaagaagatttattttcaaatagccatgattctgaaccagccagtcgtatt
aacgaattgaaatcaacgctggaagactacaactatcagtattacgttttggataatcca
actgtgacggatgctgaatatgatcgcttaatgcgggaactggtcgagctggaaaaatcg
aatccagaattattaacttctgattcaccgtcacaaaaagtgggtggggcgccattgcct
gaatttcagcaggtaactcatgaagttcccatgttgtccctcgataacgcctttagtgaa
gatgaaatgcgtgcttttgaaaagcgcatgttggatcgattaaaacgctcaatcactctg
acttattgttgtgaacctaaattagacgggcttgctgttagtttgttatatgaagatggc
aaattggttcgtggtgctacgcgtggtgatggcactgtcggtgaagatatcacgcaaaac
gtgcgtactatcaagaatattccccctagacttcgtggtgaacaataccctcaacgcgtt
gaagtgcgtggcgaagtgtttatgcctctggcgggctttgaaaagctgaatcaggaacag
gctgtgcaaggaaagaaaatctttgtaaaccctcgcaatgctgccgccggaagcttgcgt
caattagattcgcgcattactgcaaaacgtccgcttatgtttaacgcttattccatgggc
ttggtggaaggtgaaaaagaagaactggccgatacacattatgatcgtttgcagcagtta
agagaatggggattacctgtttcaaaagagatccgtcaggcaagcggtgttgaagaatgc
ctcgattattatcgggaattgggtaataagcgtcctgaacttggctatgaaattgatggt
gtcgtgtttaaggtgaacgacctcgccattcaggaagaacttggatttgttgctcgagct
ccgcgttgggctattgcccagaaattcccggcacaggaagaaatgacgacattgctggac
gttgattttcaggttggacgtaccggtgcaattactccggttgcgcgattagaacctgta
tttgttggtggtgttacggtttccaatgccactttgcataatcaggatgagatagaacgt
ttaggtgtgaagaaaggcgataccgtcattattcgcagagcaggggatgtgatcccgcaa
gtggtttctgttgtcttggaaaagcgccccgatgatgctcaagatattgttttccctgaa
cattgccctgtatgtgattcccatattgagcgcactgaagatcaggctgtggcgcgctgt
acaggaggtttagtctgtaaagcgcaacgtaaggaagccataaagcactttgtgtcccga
aaagcgttagatgtcgatggtttgggtgacaaacttattgagcaatttgtggatttgggg
tggattgaaaccccggcagatctgttcaaactggatattgctcaggtcgctgctttggag
cgtatgggcgaaaaatcggctgctaatattgataaagcgttggacgcagctaagaaaacg
accttagccaaattcatttattctttaggaatacgtgaagtgggtgaagcaaccgctgca
aacctggctaatcattttttgactctggaagctctattgcaagctgatattgctgcactt
caagaagttgatgatgtcggtgaagtcgttgcacagcatgttgtacatttctttggtgaa
gcgagaaaccgcgaagttatacagcaattgcaagatgccggtgtacattggccccaaatc
gagaaaaagtctcaggatgagcaacctctaataggcaaaacctttgtgattaccggaact
ttatccagcatgggacgcaatgatgccaaagcgcgattgcaagatttgggcgctaaagtt
gccggcagtgtttccgctaatactgattatctggttgcgggggaaaaggcgggctctaaa
ttgactaaagcgcaagagcttggcgttgaagtgatgaccgaagagcaaatgttggcgcta
ttttctgagcatgaataa
DBGET
integrated database retrieval system
