Paeniglutamicibacter sp. Y32M11: KUF55_04255
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Entry
KUF55_04255 CDS
T07362
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paey
Paeniglutamicibacter sp. Y32M11
Pathway
paey03030
DNA replication
paey03410
Base excision repair
paey03420
Nucleotide excision repair
paey03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUF55_04255 (ligA)
03410 Base excision repair
KUF55_04255 (ligA)
03420 Nucleotide excision repair
KUF55_04255 (ligA)
03430 Mismatch repair
KUF55_04255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paey03032
]
KUF55_04255 (ligA)
03400 DNA repair and recombination proteins [BR:
paey03400
]
KUF55_04255 (ligA)
Enzymes [BR:
paey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUF55_04255 (ligA)
DNA replication proteins [BR:
paey03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUF55_04255 (ligA)
DNA repair and recombination proteins [BR:
paey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUF55_04255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUF55_04255 (ligA)
MMR (mismatch excision repair)
DNA ligase
KUF55_04255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUF55_04255 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
PGRL1_N
RNA_ligase
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QXQ11142
LinkDB
All DBs
Position
963295..965640
Genome browser
AA seq
781 aa
AA seq
DB search
MHPEPTPQSEQSQSTTLPIEQQDATAAAALDAAAVIPDETLRTEYQQLVDQVRMHRAAYY
NDDAPLISDAEFDTLYSRLELLEARHPELVANDSPTQEVGGEVSAAFAPVVHLSRMYSLE
DVFSLEEVTAWGQKTAANAALRAAGHELKWLCEVKIDGLAVNLLYRDGKLVRAATRGDGT
TGEDVTHNVLTIKTIPTQLEGDNWPEEVEVRGEIFIPSADFAAYNAALIEAGKAPLANPR
NAAAGSIRQKDPAETAKRPLQMFVHGFGVRAGISAATQSETYALMASWGLPVSPYSRVVD
TLDEVLGFIAENGENRHNLLHEIDGIVVKTDAFEIQRNLGFTSRVPRWAVAYKYPPEEVN
TKLIDIQVQVGRTGRVTPFGIMAPVLVAGSTVERATLHNQDVVKAKGVLIGDTVILRKAG
DVIPEIVGPVLALRDGSEREFIMPTFCPSCGSPLAPAKEGDVDIRCANAESCPVQLTERV
AHLGGRGAFDIEALGYEAAQALTVGPGENPEENGGVIAPAGPGPLRSEAVIFDLAAGNPD
STLRQTLADVQVWREIRSKGEGTGKFALVPYFYSKATAKKPSGPTRTTEKLFEELEKAKN
KPLWRVLVGLSIRHVGPTASRSLATKYGSMDAIITALEAEGAREALAEVDGVGAIIADAL
IEWFAVDWHRQIVASWAAAGVAMKDERDESIVKHLEGMSIVVTGTLPTYSRDAAKEAIII
RGGKAAGSVSKNTSYVVAGEAAGSKLDKAVSLGVQVLDEEGFELLLNGGPEAVAGRPNPE
V
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcacccagagccgaccccgcagtcagagcagagccagtccaccaccctcccgatcgag
cagcaggacgccaccgcggccgcagcgctcgacgcggcggcggttatccccgacgaaacc
ctgcgcaccgaataccagcagctggttgatcaggtgcggatgcatcgcgccgcctactac
aacgatgacgccccgctgatttccgatgccgagttcgatacgctctattcgcgcctggaa
ctcttggaggcgcgccaccccgagctcgtcgccaatgattcaccgacccaggaggtcggc
ggtgaggtctccgccgcctttgccccggtggtgcacctctcgcgcatgtactccctggag
gacgtgttctcactggaagaggtcaccgcctggggacagaagaccgcggccaatgccgcg
ctgcgcgccgccgggcacgagctgaaatggctctgcgaggtcaagatcgacgggctggcg
gtgaacctgctctaccgcgacggcaagctggtgcgcgccgccacccgcggggacggcact
accggggaggacgtcacccacaacgtgctcaccatcaagacgatccccacgcagctggaa
ggggacaactggcccgaagaggtggaagtccgcggggagatcttcatcccctcggccgac
ttcgccgcctacaacgcggcactcatcgaggccggcaaggcaccgcttgccaacccacgc
aacgccgcagccggctccatccggcagaaggaccccgcggagaccgccaagcgcccgttg
cagatgtttgtccatggcttcggggtgcgcgcgggcatttccgcggcgacgcagtcggaa
acctacgcgctcatggcttcctggggacttccggtctcaccctactcgcgcgtggtcgac
acgctcgatgaggtgctcggattcatcgccgagaacggggaaaaccgccacaatttgctc
cacgagatcgacggcatcgtggtgaaaaccgatgcctttgagatccagcgcaacctcggt
tttacctcgcgggtgccgcgctgggcggtggcgtacaagtacccgcccgaagaggttaac
accaagctcatcgacattcaggtgcaggtggggcgcaccggacgtgtcaccccctttggc
atcatggcgccggtgctggtggccgggtccaccgtggagcgcgcgacgctgcacaatcag
gacgtcgtgaaggccaagggtgtgctcatcggggacactgtgatcctgcgcaaggcaggg
gacgtgatcccggaaatcgtcggccccgtgctcgcgctgcgtgatggcagcgaacgcgaa
tttatcatgccgacgttctgcccctcctgtggttctccgctggccccggccaaggagggc
gacgtggacattcgttgcgccaacgccgaatcctgcccggtgcagctgaccgaacgcgtg
gcccacctgggcggacgaggcgccttcgacatcgaggcgctgggttatgaggcggcgcag
gccctgaccgtgggcccgggtgagaatccggaggaaaacggcggtgtcatcgcgccggcc
ggtcccggtccgctgcgcagcgaggccgttatcttcgatttggctgccggaaacccggat
tccacgctgcgtcagacgctggccgatgtgcaggtttggcgcgaaatccgttccaagggg
gagggtaccgggaagttcgcactggtcccatacttctactcgaaggccaccgccaagaag
ccttcggggcccacccggaccaccgaaaagctcttcgaggagctggagaaggcgaagaat
aagccgctgtggcgggtgctggtcggattgtccatccggcatgtgggtccgaccgcctcg
cgctcgctggccaccaagtacggctcgatggatgccatcatcactgcgctggaggcggag
ggcgctcgtgaggcactggccgaggttgacggtgtgggggcgatcatcgccgatgccctg
atcgagtggttcgccgttgattggcaccggcagattgttgcgtcctgggcggccgccggg
gtggccatgaaggatgaacgcgatgaatccatcgtgaaacatctggagggcatgagcatc
gtggtcaccggcacgctgccaacctacagccgcgacgcggccaaggaagcgatcattatt
cgcggcggcaaggcggccggatctgtctccaaaaacacctcctatgtggtggcgggggag
gccgcgggatccaagctagataaggccgtatcgctcggcgtgcaggtgcttgacgaggaa
ggctttgagctgctgctcaacggtggacccgaggccgtggcgggacgtcccaaccccgag
gtttag
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