Paracoccus aerodenitrificans: PAE61_08500
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Entry
PAE61_08500 CDS
T09265
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paez
Paracoccus aerodenitrificans
Pathway
paez03030
DNA replication
paez03410
Base excision repair
paez03420
Nucleotide excision repair
paez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAE61_08500 (ligA)
03410 Base excision repair
PAE61_08500 (ligA)
03420 Nucleotide excision repair
PAE61_08500 (ligA)
03430 Mismatch repair
PAE61_08500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paez03032
]
PAE61_08500 (ligA)
03400 DNA repair and recombination proteins [BR:
paez03400
]
PAE61_08500 (ligA)
Enzymes [BR:
paez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAE61_08500 (ligA)
DNA replication proteins [BR:
paez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAE61_08500 (ligA)
DNA repair and recombination proteins [BR:
paez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAE61_08500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAE61_08500 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAE61_08500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAE61_08500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
CagY_I
Motif
Other DBs
NCBI-ProteinID:
WBU65444
LinkDB
All DBs
Position
1431158..1433443
Genome browser
AA seq
761 aa
AA seq
DB search
MAETAAHGDDAAAWPSSSVDLSAITEAEAADHIAQLTEMLSKANSDYHRDDAPTITDAEY
DRAKRSLAALEEKFPQLAHPDSPTQQVGAAPSDAFGKITHAQRMMSLANAFDEAEVAEFV
SRIRSFLGLEPEEGLDFTAEPKIDGLSLSLRYEDGRLVQAATRGDGTVGENVLANARTIA
DIPDTLNGTAPKMVEVRGEVYMSHDDFAALNAKGGARIFANPRNAAAGSLRQLDPEVTRS
RPLKFFAYSWGELSEALAETQMRAVERLESFGFKINRLIRLCHTVEEMIAQWAAIEAQRA
SLGYDIDGVVYKVNDLAYQNRLGFRATTPRWALAHKFPAEIAWTRLRDIEIQVGRTGALS
PVARLDPVTVGGVTVSNATLHNEDYIAGISSNGEKIRDTDIRIGDWVKVYRAGDVIPKIS
DVDEAKRDGSEKPFTFPETCPECGSAAIREPGDAVRRCTGGLICPAQAIEKLKHFVSRGA
FDIEGLGAKQIEAFYRDDILPIRSPADIFTLAARDRENLAKLKNREGWGETSAQNLFDAI
EQRRHIPLARLIYALGIRHVGEVVAADLARYFGSWDKFVAEIDAAIPAAERHMLADDAIL
HERAAAEAEGRRARISATREKVLSQEPALGPEAVAAYETLTNIDGIGAVVAQSLCATFSQ
QKERQSIDALVGHLTVEDAEIPDMAGSAIAGKTIVFTGTLERMTRAEAKARAEALGAKVA
GSVSAKTDILVAGPGAGSKATKAAALGVEVIDEDTWLSLIG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaccgcagcgcatggggatgatgcggcggcgtggccatcttcttcggtagat
ttgtccgcgatcaccgaagcggaggccgccgaccatatcgcgcagcttaccgaaatgctg
tcgaaggcgaacagcgattatcatcgtgacgacgcgccgaccatcacggatgcggaatat
gaccgggcgaagcgcagccttgccgctctggaggagaaattcccgcaactcgcccatccg
gacagcccgacgcagcaggtcggggcggcaccgtcggacgctttcggcaagatcacccat
gcgcaacgcatgatgtctctggccaatgcgttcgatgaggccgaggtggcggaatttgtc
tcgcggatcagaagctttctcgggttggagccggaagaaggtctggatttcaccgccgag
ccgaagatcgatggcttgtcgctttcacttcgctatgaagatggcaggcttgttcaggcc
gcgacgcgtggcgatggaaccgtgggcgaaaacgtgctggccaatgcccgtacgattgcg
gatatcccggatacactcaatggcaccgcgccgaaaatggttgaggtgcgcggcgaggtt
tatatgtcgcatgacgatttcgccgcgctcaatgccaaaggcggtgccagaatttttgcc
aatccgcgcaatgctgcggcaggatcgctgcgtcagctcgatccggaagtcacccgctca
cgcccgctgaaatttttcgcctatagctggggcgagttgagcgaagctctggcggagacg
cagatgcgggccgtcgaaaggctggaatcgttcggatttaagatcaacaggctgatccgg
ctctgtcatacggttgaagaaatgatcgcccaatgggccgcgatcgaggcgcagcgggcg
agccttggctatgacattgacggtgtcgtctacaaggtgaacgatctggcatatcagaac
cgtctggggtttcgcgcgaccacgccgcgttgggctctggcgcataagtttcctgccgaa
atcgcctggacgcggctgcgcgatatcgaaattcaggtcgggcggacgggtgcgttgtcg
cccgtcgcgcggctggacccggtgacggtgggcggggtcacggtctcgaatgcgacgctg
cataatgaagactatattgccgggatcagttcgaatggggaaaagatccgcgacacggat
atcaggatcggcgattgggtgaaggtctatcgggccggtgacgtgatcccgaagatctct
gatgtcgatgaggcaaagcgcgacgggagtgaaaaacccttcactttccccgagacctgc
cccgaatgcggatcggctgcgatacgtgagccgggcgatgccgtgcggcgctgcacgggc
gggctgatctgtcccgctcaggcaattgagaagctgaaacatttcgtcagccgcggcgcg
ttcgatattgaggggcttggcgcgaaacagatcgaggcgttctatcgcgacgatatactt
ccgatccgcagcccggcggatattttcacgctggcggcgcgtgaccgggagaatcttgcg
aagctgaaaaaccgcgaaggctggggcgaaacctcggcgcaaaatctgttcgatgcgatt
gagcagcgccggcacattccgcttgcgcgtctgatctatgcgcttggcattcgccatgtg
ggtgaggtcgtggccgccgatctggcccggtatttcggcagttgggacaaattcgtggcc
gagatcgacgccgccattccggcggcagagcggcatatgctggccgatgacgccatcctg
cacgaacgggcagccgccgaggcagagggtcgccgcgcccggatcagcgccacgcgcgag
aaggttctgtcgcaagaacccgctttgggcccggaagccgttgccgcctatgagacgctg
accaatattgacggtatcggggctgtcgtggcgcaatcgctctgcgcgacgttttcccaa
cagaaagagcggcagtcgattgatgcgcttgtcggacatctgacggttgaggatgccgaa
atccccgatatggcgggcagcgcgattgcgggcaagaccatcgtgtttacgggtactctg
gaacgtatgacacgggccgaggcgaaggcgcgggcagaggctctcggggccaaggtggcc
gggtcggtttcggcgaaaaccgatattcttgtcgccggaccgggggcgggatcgaaggcc
acgaaagccgccgcactgggtgtcgaggtgattgacgaggacacatggctgagcctgata
ggatag
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