Pseudoalteromonas agarivorans: PAGA_a1373
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Entry
PAGA_a1373 CDS
T06137
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paga
Pseudoalteromonas agarivorans
Pathway
paga03030
DNA replication
paga03410
Base excision repair
paga03420
Nucleotide excision repair
paga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAGA_a1373 (ligA)
03410 Base excision repair
PAGA_a1373 (ligA)
03420 Nucleotide excision repair
PAGA_a1373 (ligA)
03430 Mismatch repair
PAGA_a1373 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paga03032
]
PAGA_a1373 (ligA)
03400 DNA repair and recombination proteins [BR:
paga03400
]
PAGA_a1373 (ligA)
Enzymes [BR:
paga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAGA_a1373 (ligA)
DNA replication proteins [BR:
paga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAGA_a1373 (ligA)
DNA repair and recombination proteins [BR:
paga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAGA_a1373 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAGA_a1373 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAGA_a1373 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAGA_a1373 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATC81792
LinkDB
All DBs
Position
I:1294994..1297012
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQINHLRSTLEQHNYNYYVLDKPSIPDAEYDRLLRELSALERENPEFLTPDSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFSAFNRRIKERLMSQDELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPAELEVRGEVFMDSAG
FEKLNSEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTIPEDHY
QQLAKLTDWGLPLCPETKLVEGTQAALDYYSDILTRRSELKYEIDGVVIKINQKALQERL
GFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIVFPASCPICDSHVEKVEG
EAVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELVKTPADLFILKQG
HFESLERMGPKSAKNLVDALEVAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLEKVTQ
ASIESLTQVSDVGVIVATHVRGFFDEQHNVDVVNALIEQGINWPALTPPSEDEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVAGSVSAKTDALVAGEKAGSKLTKAQDLGIDILSE
DDLIALFDKYNA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaaattaatcatcttcgtagtacgttagagcaacacaac
tacaattattatgtccttgataaacccagtattcctgatgcagaatacgatagactattg
cgcgagttaagcgcccttgaaagagaaaacccagaatttttaacgcctgactcacctact
caaaaggtaggaggcgctgcgctgagtaaatttgaacaagttgctcaccaagtgcctatg
ttatcgcttgataacgcctttagtgaagaagaatttagcgcctttaaccgccgcattaaa
gagcgtttaatgagccaagatgagctcactttttgttgtgagcctaagttagatggcttg
gctgtgtcgattatttaccgtgacggcgtgcttgtgcaggccgcaactcgtggcgatggt
tttactggcgagaacattacacaaaatgtcaaaacaatccgtaacgtgccccttaagctg
cgtggcgattaccccgcagagcttgaagtacgtggcgaagtatttatggatagcgcaggg
ttcgaaaagctaaacagcgaagccgaaaaacgtggcgaaaaagtatttgtaaatccacga
aatgcagccgcaggtagtttacgccagcttgattcaaaaattaccgctaagcgcccgcta
atgttttatgcgtatagcactgggctggtggccgatggcacaatccctgaggatcactac
caacaattggcaaaattaaccgattggggtttaccgctgtgcccagaaacaaagttagtt
gaaggtacgcaagcggctttagattactacagtgatattttaacgcgcagaagcgagctt
aaatatgaaattgatggcgtagtaattaaaataaaccaaaaagccttacaagagcgttta
gggtttgttgcacgtgcaccgcgctgggcaattgcttataagtttcctgcgcaagaagaa
ataacccagttacttgatgtagaatttcaggttggtcgcacaggcgcaataacgccggta
gcgcgtttagagcctgtatttgtaggcggtgttacggtatcaaacgcaacgctgcacaat
ggcgatgaaatagcccgcttaggcgtaaaggtaggcgatacagtaattatacgccgcgcc
ggcgatgttattccgcaaattacacaagtagtacttgagcgccgcccagatgatgcacgc
gacattgtatttcctgccagttgccccatttgtgactcacacgttgaaaaagtagaaggt
gaggccgtggctcgttgtaccggtggcttagtgtgccaagctcagcgtaaacaagcgata
aagcattttgcatcacgcaaagcgcttgatatagatggcttaggcgacaaaatagttgat
caactggttgatagagagctggtaaaaacccccgcagatttatttatattaaaacaaggt
cactttgagtcacttgagcgtatgggtcctaagtcggctaaaaacttagtggatgcgctt
gaagttgcaaaaacaacgacgcttgcaaagtttttatactcgctgggtattcgtgaggtt
ggcgaggccacagcgcaaaacttagcaaatcattttttaacacttgaaaaggtaacccaa
gccagtattgaaagccttacacaagtgagtgatgtaggggttattgtagcaactcatgtt
cgtggcttttttgatgagcaacataatgtagatgtggttaatgctttaattgaacaaggc
attaattggccagcgctaacgccgccttcagaggatgagcaacccttagctggactaacc
tatgtattaactggcactcttaatactttaaaccgaaacgatgctaaagcacgcttacaa
cagttaggtgcaaaagtagccggtagtgtgtcggctaaaacagatgcattggtggcgggc
gaaaaagccggctctaaattaactaaagcacaagatttaggcatagacatacttagcgaa
gatgacttaattgcactgtttgataagtacaatgcttag
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