Planktothrix agardhii: NIES204_15800
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Entry
NIES204_15800 CDS
T05658
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pagh
Planktothrix agardhii
Pathway
pagh03030
DNA replication
pagh03410
Base excision repair
pagh03420
Nucleotide excision repair
pagh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES204_15800 (ligA)
03410 Base excision repair
NIES204_15800 (ligA)
03420 Nucleotide excision repair
NIES204_15800 (ligA)
03430 Mismatch repair
NIES204_15800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pagh03032
]
NIES204_15800 (ligA)
03400 DNA repair and recombination proteins [BR:
pagh03400
]
NIES204_15800 (ligA)
Enzymes [BR:
pagh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES204_15800 (ligA)
DNA replication proteins [BR:
pagh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES204_15800 (ligA)
DNA repair and recombination proteins [BR:
pagh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES204_15800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES204_15800 (ligA)
MMR (mismatch excision repair)
DNA ligase
NIES204_15800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES204_15800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
RNA_ligase
Dna2
Motif
Other DBs
NCBI-ProteinID:
BBD54290
LinkDB
All DBs
Position
complement(1860165..1862213)
Genome browser
AA seq
682 aa
AA seq
DB search
MIEITPEIQQRIEELRRLLQKASYEYYVLDAPTMADSVYDQLYRELQDLEQQYPQLITTD
SPTQRVGEKPATQFQSVKHNIPLYSLDNAFNFNDLKTWQERGLKTATNTSEFPTYICELK
IDGSALALTYENGILVRCATRGDGITGEEITQNVKTIRSIPLKLELENPPNLVEVRGEAF
LSLKVFEIINQERQKERGSLFANPRNAAAGTLRQLDSKIVAQRKLDFFAYTLHIHEQNNL
EIVSAQTQWDNLELLQKMGFKVNPNRQLCSNVDEVIKYCEYWDQKRHNLPYMTDGVVIKI
NPLSLQEKLGFTQKFPRWAIAYKYPAEEMPTQIKSVTVQVGRTGALTPVAELNPILLAGT
TVQRATLHNRDRLAELDLHIGDTVIVRKAGEIIPEVVKVLLELRPQDAKKFEMPTHCPEC
GQAVVQSLGEAVTRCINDSCPAILQGSLIHWCSRDALDINGIGDKLVQQFVNKKLVNSVA
DLYDLTVEQLMTLDRMGEKSATKIIQAIATSKNQPWARVLYGLGIRHVGSVNAELITQKF
KSVEQLTPASAAEIEGVYGIGPEIAYSVYEWFNLPANQLLIERLKTAGLELANSEKIDYN
QSNEPQTLAGKTFVITGTLPTLKREDTKKLIQNAGGKVTDSVSKKTDYLVVGEEAGSKLK
KAQDLGITLLSEAELLTLISGV
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattaccccagaaattcagcaacgaattgaagaattaagacggttattgcag
aaagctagttatgaatattatgtcctagatgcgccaacaatggcggattctgtttatgat
caattatatcgagaactgcaagatttagagcaacaatatccgcaattaattacaaccgat
agcccaactcaaagagtaggagaaaaacccgcgactcaatttcaatcagttaaacataat
attcctttgtacagtttagataatgcttttaattttaatgatttaaaaacttggcaagag
cgaggtctaaaaacagctacaaatacatcagaatttccgacttatatttgtgaattaaaa
atagatggatctgccttagcattaacttatgaaaacggaatattagttagatgtgcaacc
cgaggagatgggataaccggggaagaaattactcaaaatgtaaaaacaattcgttcaatt
cccttgaaattagaattagaaaatccacctaatttagttgaagttcgaggggaagcattt
ttatcattaaaagtatttgaaataattaatcaagaaagacaaaaagaaaggggatcatta
tttgctaatcctagaaatgctgcggctggaactttaagacaattagactctaaaattgtc
gcccaacggaaactagatttttttgcctatactttacatattcacgaacagaataattta
gaaatagtttctgctcaaacccaatgggataatttagaattattgcaaaaaatggggttt
aaagttaatcctaatcgtcaactttgttctaatgtagatgaagtgatcaaatattgtgaa
tattgggatcaaaaacggcacaatttaccctatatgaccgatggagtggtaattaaaatt
aatcccttatctctacaggaaaaattaggatttacccagaaatttccgcgatgggcgatc
gcctataaatatccggccgaagaaatgccaactcaaattaaatctgttactgtacaagtg
gggagaactggagctttaacccccgttgcagaacttaacccgattttactggcaggtaca
acggtgcaaagagcgacattacataaccgcgatcgcctagctgaattagatctgcatatc
ggtgatacggtaattgtccgcaaggccggggaaattattcccgaagtcgtaaaagtatta
ttagaattgcgcccccaggacgctaaaaagtttgaaatgccaacccattgcccagaatgc
ggtcaggcggttgtacagtcattaggagaggcggtaaccagatgtattaatgattcttgt
ccggcaattttacaaggatctttgattcattggtgttccagagatgccttagatattaat
ggtattggggataaattagttcaacagtttgttaataaaaaattagttaattccgtagca
gatttatatgatttaaccgttgaacaattaatgactttagaccggatgggggaaaagtca
gcgactaaaattattcaggcgatcgcaacttctaaaaaccaaccttgggcgcgggtatta
tatggtttaggaattcgtcatgttggcagtgtgaatgccgaattaattacccaaaaattc
aagagtgttgaacaattaaccccagcatccgccgccgaaattgaaggtgtttatggcatc
gggccagaaattgcctattctgtctatgaatggtttaatcttcctgccaatcaactatta
atagaaagattaaaaaccgcaggattagagcttgcaaattcagaaaaaatagactataat
caaagtaatgaacctcaaaccttggcaggcaaaacttttgtaattacaggaacattacca
acattaaaacgggaagacacaaaaaaattaattcaaaatgccggaggaaaagtcacggat
tcagttagtaaaaaaacagattatctagtagtaggagaagaagcaggatctaaacttaaa
aaagcccaagatttaggaattaccctattatcagaagcagaattactaactttaatatct
ggtgtttaa
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