Paenarthrobacter sp. GOM3: IRJ34_06850
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Entry
IRJ34_06850 CDS
T10366
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pago Paenarthrobacter sp. GOM3
Pathway
pago03030
DNA replication
pago03410
Base excision repair
pago03420
Nucleotide excision repair
pago03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pago00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IRJ34_06850 (ligA)
03410 Base excision repair
IRJ34_06850 (ligA)
03420 Nucleotide excision repair
IRJ34_06850 (ligA)
03430 Mismatch repair
IRJ34_06850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pago03032
]
IRJ34_06850 (ligA)
03400 DNA repair and recombination proteins [BR:
pago03400
]
IRJ34_06850 (ligA)
Enzymes [BR:
pago01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IRJ34_06850 (ligA)
DNA replication proteins [BR:
pago03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IRJ34_06850 (ligA)
DNA repair and recombination proteins [BR:
pago03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IRJ34_06850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IRJ34_06850 (ligA)
MMR (mismatch excision repair)
DNA ligase
IRJ34_06850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IRJ34_06850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WOH20037
LinkDB
All DBs
Position
1480598..1482913
Genome browser
AA seq
771 aa
AA seq
DB search
MSTPEIANPVETTGEGAAAAVVEAEGTPPSGSLRDEYEQLADLVRKYRYAYYQEDSPTVS
DAEFDELYRRLEELEALHPELVSNDSPTQEVGGEVSSAFAAVEHLQRMYSLDDVFSLDEL
EAWVRKAEASVAKLGDRVPPINWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITH
NVLTIKEIPRELSGSGYPTEVEIRGEVFIPSKAFTEFNQSLVAAGKAPLANPRNAAAGSL
RQKDPAETAKRPLSMFVHGIGAREGLDATSQSETYQLLAEWGLPVSPYSKVLDTYEGVLE
FIAHYGEHRHDLLHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIM
VNVGRTGRVTPFGLMEPVKVAGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIV
GPVLALRDKQDPPVREFVMPTECPSCGTPLAPSKEGDVDIRCPNAKSCPSQLRERVFHVA
SRGAFDIEALGWEAAVALTQPAEPETPPLSSEAGLFSLTREDLADVLIRREKRSKGVGTG
EFELVPYFYTKGTAKSPSKPTATTEKLFVELEKAKKQPLWRVLVALSIRHVGPTASRALA
TAFGSMDAIRNATEEQMAHVDGVGPTIAVALKEWFAVDWHNEIVDSWAAAGVRMEDERDS
SMPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKA
EQLGVPVLDEDGFRELLANGPATTDADPDTEAAANTEAAADSDAIPEAASE
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaccagaaatcgcgaatccggtagaaaccacaggtgaaggtgcggcagccgcc
gtcgtcgaagcggaagggaccccgccttcagggtcgttgcgggacgaatatgagcaatta
gccgacctcgtccgcaagtaccgttatgcctattaccaggaagactcacccacggtctcg
gacgcagagttcgatgaactctaccgccgccttgaggagctggaagctcttcatccggag
ctcgtctccaacgattcccccacacaggaggtcggtggggaagtctcatcggcgttcgca
gcagtggagcacctgcagcggatgtacagccttgatgacgtcttttcgctggatgaactc
gaagcgtgggtccgcaaggccgaagcatccgtcgcgaagctcggtgacagagttccgcct
atcaactggctgacggagttgaaaatcgatggcctcgccgtgaacctcctgtatcgggac
ggcaagttggtgcgcgcggccactcgcggcgatggcaccaccggggaagacatcactcac
aatgtcctcaccatcaaggagatcccgcgggaactcagcgggtccggttacccgacggaa
gtggaaatccggggcgaagtgttcattccgtccaaggcgttcacggagttcaaccagagc
cttgtggccgcgggcaaagcgcccctcgccaacccacgcaacgcggccgcgggctccctg
cggcaaaaggatccggccgaaacggcgaagcgtccgctgagcatgttcgtccacggcatc
ggcgcccgtgagggactggatgcgaccagccagtcggaaacgtaccaattgctcgccgaa
tggggactgccggttagtccctattcgaaggtgctggacacttacgagggcgtcctcgaa
ttcattgcgcactatggcgagcaccgccacgacctccttcacgagatcgacggcatcgtg
gtcaagattgacgatttcgccacccagcgcgccctcggctacacctccagggtgcccagg
tgggcggcggcgtacaaatacccgccggaagaagtgcacaccaagctcctggacatcatg
gtcaacgtcggccggaccgggcgggtcacgccgttcggcctgatggagcccgtgaaggtc
gccggttccacagtgggcatggccaccctgcacaaccaggacgtcgtcaaggccaagggc
gtcatgatcggggacatcgtgatcctgcgaaaggccggcgacgtcatccccgaaatcgtt
ggccccgtcctggccttgcgggacaagcaggacccgcccgtccgcgagttcgtgatgccc
accgaatgcccttcctgcggtacgccactggcgccgtccaaggaaggggacgtggacatc
cgctgccccaacgccaagtcgtgcccgtcccagttgcgggagcgcgtgttccacgtcgcc
agcaggggtgcgttcgacattgaagcgctgggctgggaagcggccgttgcactgacccag
cctgcagagccggaaaccccgccgctgagcagcgaggccggactgttcagcctgacgcgc
gaggaccttgccgatgtcctgatccgcagggaaaagcgttccaagggcgtgggcacgggg
gagttcgaactcgtcccgtatttctacaccaagggaaccgccaagtccccgtccaagccg
acggcgaccaccgagaaactctttgtggaactggagaaagccaagaagcagcccctgtgg
cgcgtgctggtggcactctccatccggcacgtcggcccgaccgcttcccgtgcactggcc
acagcgttcggcagcatggacgccatccgtaacgccaccgaggagcaaatggcgcacgtg
gacggagtgggccccaccatagccgtggccctcaaggagtggtttgccgtggactggcac
aacgaaatcgtggacagctgggctgctgcgggagtccggatggaggatgagcgcgactcc
tcaatgccgcggacacttgaaggcctcaccgtggtggtcaccggaacgcttccgaacttc
agcagggacgaggccaaggaagccatcatcatccgcggcggcaaggcctcgggatccgtc
tccaagaacaccagctacctcgtggccggcgaaagtgcagggaccaagctggacaaggct
gaacagctgggggttcccgtgctggacgaggacggcttccgcgagctgctggccaacggg
ccggcgacgacggacgcggacccggacactgaagcggcggcgaacactgaagccgcagcg
gactctgacgcgataccggaggcagcatccgaatga
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