Paucibacter sediminis: PFX98_18935
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Entry
PFX98_18935 CDS
T10150
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pais Paucibacter sediminis
Pathway
pais03030
DNA replication
pais03410
Base excision repair
pais03420
Nucleotide excision repair
pais03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pais00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFX98_18935 (ligA)
03410 Base excision repair
PFX98_18935 (ligA)
03420 Nucleotide excision repair
PFX98_18935 (ligA)
03430 Mismatch repair
PFX98_18935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pais03032
]
PFX98_18935 (ligA)
03400 DNA repair and recombination proteins [BR:
pais03400
]
PFX98_18935 (ligA)
Enzymes [BR:
pais01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFX98_18935 (ligA)
DNA replication proteins [BR:
pais03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFX98_18935 (ligA)
DNA repair and recombination proteins [BR:
pais03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFX98_18935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFX98_18935 (ligA)
MMR (mismatch excision repair)
DNA ligase
PFX98_18935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFX98_18935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WIT10965
UniProt:
A0AA95N996
LinkDB
All DBs
Position
4101412..4103475
Genome browser
AA seq
687 aa
AA seq
DB search
MSQTDTLAAADRAAALRAQLHHHAHLYYVLDAPVLPDAEYDKLFQELQALEAAHPELLSP
DSPTQRVIGQVLDGFAPVRHAVPMLSIRTETDTEASGARAFDERVRRQLELGEDAPPVEY
AAELKFDGLAINLRYEQGVLVQAATRGDGETGEDVTQNIRTVGQIPLRLKGVHAPVLEVR
GEVYMRRDDFEALNERQREAGEKTFVNPRNTAAGAVRQLDPALAAKKPLSFFAYGLGEVQ
GWVVPETHSALLDALQAMGMPVCEHRVVTQGAAGLIAFHQAMGAQRDGLPFDIDGIVYKV
NSRALQQRLGFVTREPRWAVAHKYPAQEQLTRLLAIDIQVGRTGKLTPVARLEPVFVGGT
TVSNATLHNLFELRRKGVRVGDQVIVRRAGDVIPEVVGVLKAERAAYVPNFRMPRSCPVC
DSATVREKGGMDYRCSGGIFCPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVDAGIVDSL
PSLYKLGVAKLAALERMAEKSAQNIVDALEKSKTTTLARFLFGLGIRQIGETTAKDLARH
FGSLDALMDASVEQLLQVRDVGPIVAQSIHMFFAQPHNREVVAQLRAAGVHWPEGEGAAA
EQGPKPLLGKTLVLTGTLPTLSRDAAKDLIEAAGGKVSGSVSKKTHYVVAGEEAGSKLDK
ARELGVTVLDEAGLQALLLSASSAQSA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaccgataccctcgccgctgcggatcgcgccgccgccctgcgtgcccaactt
catcaccacgcccatctctactacgtgctcgatgccccggtgctgccggatgccgagtac
gacaagctgttccaggagttgcaggcgctggaggccgcccaccccgagctgctgagcccc
gactcgcccacccagcgcgtgatcggccaggtgctggacggctttgcgccggtgcgccat
gccgtgccgatgctgagcatacgcaccgagaccgacaccgaggccagcggtgctcgcgcc
tttgacgagcgcgtgcgccgccagcttgagctgggcgaggacgcgccaccggtggaatat
gccgccgagctcaagttcgatggcctggccatcaatctgcgctacgagcagggcgtgctg
gtgcaggccgccacccgcggcgatggcgagaccggcgaggacgtgacgcagaacatccgc
accgtgggccagatccccttgcgcctcaagggcgtgcacgcgccggtgctggaggtgcgc
ggcgaggtctatatgcggcgcgacgatttcgaggccctcaacgagcgccagcgcgaggcc
ggtgaaaaaacctttgtgaatccgcgcaacaccgcggccggcgcggtgcgccagctcgac
ccggcgctggccgccaagaagccgctgagcttcttcgcctacggcctgggcgaggtgcag
ggctgggtcgtgcccgagacgcacagcgccctgctggacgcgctgcaggcgatgggcatg
ccggtgtgcgagcaccgcgtcgtcacccagggggccgcgggcctgatcgcctttcaccag
gccatgggcgcgcagcgcgacggcctgcccttcgacatcgacggcatcgtctacaaggtc
aacagccgtgccctgcagcagcgcctgggctttgtgacgcgcgagccgcgctgggcggtg
gcgcacaaatacccggcgcaggaacagctgacgcgcctcctggcgatcgacatccaggtc
ggccgcaccggcaagctcacgccggtggcaaggcttgagccggtgttcgtgggcggcacc
acggtcagcaacgccaccctgcacaacctcttcgagctgcgccgcaagggcgtgcgcgtg
ggcgaccaggtgatcgtgcggcgcgccggcgacgtgatccccgaagtggtgggcgtgctg
aaggccgaacgcgccgcctacgtgcccaatttccgcatgccgcgcagctgccccgtctgc
gacagcgccaccgtgcgcgagaagggcggcatggactaccgctgctcgggcggcatcttc
tgcccggcccagcgcaagcaggcgctgctgcactttgccggccgccgcgccatggacatc
gagggcctgggcgacaagctggtcgagcagctggtggacgccggcatcgtcgacagcctg
cccagcctctacaaactgggtgtggccaagctggcggcgctggagcgcatggccgagaag
agcgcgcagaacatcgtcgatgcgctggagaagagcaagacgaccacgctggcgcgcttt
ctgttcgggctggggattcgccagatcggcgagaccaccgccaaggatctggcgcggcat
ttcggttcgctcgacgccttgatggacgccagcgtcgagcagctgctgcaggtgcgcgac
gtcggccccatcgtggcgcagagcatccacatgttcttcgcccagccgcacaaccgcgag
gtggtggcgcagctgcgcgccgccggcgtgcattggcccgagggcgagggcgctgccgcc
gagcagggccccaagccgctgctgggcaagaccctggtgctcaccggcacgcttcccacg
ctctcgcgcgacgccgccaaggacttgatcgaagcggcgggcggcaaggtcagcggctcg
gtctccaagaagactcactatgtggtggcaggcgaggaggccggctccaagctcgacaag
gcgcgcgagctgggcgtcacggtgctggacgaggcgggcctgcaggccctgctgctcagc
gcttcgtcagctcaaagcgcttga
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