Pantoea ananatis AJ13355: PAJ_3138 Help Entry PAJ_3138          CDS       T01969                                  Symbol yicF Name (GenBank) DNA ligase YicF   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism paj  Pantoea ananatis AJ13355 Pathway paj03030   DNA replication paj03410   Base excision repair paj03420   Nucleotide excision repair paj03430   Mismatch repair Brite KEGG Orthology (KO) [BR:paj00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     PAJ_3138 (yicF)    03410 Base excision repair     PAJ_3138 (yicF)    03420 Nucleotide excision repair     PAJ_3138 (yicF)    03430 Mismatch repair     PAJ_3138 (yicF)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:paj03032]     PAJ_3138 (yicF)    03400 DNA repair and recombination proteins [BR:paj03400]     PAJ_3138 (yicF) Enzymes [BR:paj01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      PAJ_3138 (yicF) DNA replication proteins [BR:paj03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      PAJ_3138 (yicF) DNA repair and recombination proteins [BR:paj03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      PAJ_3138 (yicF)    NER (nucleotide excision repair)     GGR (global genome repair) factors      PAJ_3138 (yicF)    MMR (mismatch excision repair)     DNA ligase      PAJ_3138 (yicF)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       PAJ_3138 (yicF) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_DNA_ligase DNA_ligase_aden HHH_5 RNA_ligase HHH RecR_HhH Motif Other DBs NCBI-ProteinID:  BAK13218 UniProt:  A0A0H3L5M0 LinkDB All DBs Position complement(3748031..3749800) Genome browser AA seq 589 aa AA seqDB search MRGMFIVGLLLIFSTFSSLAALCPAWTSARAVSEIAHLQQQLRQWDKAYFQQGRSLVSDA DYDSLQQRLNHWQRCFTQAADEYVPALPEDGTQWHPVAHTGVKKVRDKRALGYWMQARND LWVQPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIVLQ GELFLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASMPERLAR LSSWGFDLASHWTQPVQDEEDAASWRERWFHAPLPFVTDGIVVHQAARPAGKYWQPGEGE WAIAWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNIQPVQLDDKTVRRVNIGSLKRWREQD VIAGDQVTVSLAGQGIPRLERVIWRVAQRDYPEPPGSEHFTHLSCYTLTPDCHRQLLARL SWLSQKFVLNIPGVQRSTWQRLLDTGCITHLFSWLTITPEQIAAAAGISSERAQQIWHRF ELTRQQPLRRWVNALGIALPQKALRALADKEWEPLLARDVQTWQALPGVGARRAERIAAQ FQDAGLRKLITFLQQQSIPASSVFRVGIIEDGQAESKPQCQQAGKETEK NT seq 1770 nt NT seq  +upstreamnt  +downstreamnt atgagagggatgtttattgttgggctgctactgatattcagcacgttttcttcccttgcg gctttgtgccccgcctggacgtcagcgcgtgccgtcagtgagatcgcgcatttgcaacag caacttcggcagtgggataaggcgtatttccagcaagggcgctcgctggttagtgacgca gactacgatagcttgcagcagcggcttaaccactggcagcgctgttttactcaggctgcg gatgaatatgtgcctgccttgcctgaggacggtacgcagtggcatcccgttgcgcacacc ggcgttaaaaaagtacgggataaacgtgcgctgggttactggatgcaggcacgaaacgat ctttgggtacaaccaaaaatcgatggcgttgccgtctccctgatctatcgacagggaaaa ctggtctcgctaatcagccgcggcgatgggttacacggcgagcagtggctggcgaaagcc cgtcatattcctgccattccatcggttatcgacagtcagcaaggcagcatcgtcctgcag ggcgagctttttttgaagatgaccggtcatcagcaggctgtggacggcggcaggaatgcc agagcccgtgtggcaggggcaatgatgagccaggctgactcgccgctgctggcacaactg ggtatttttatctggagttggcctgacgggccggcgagtatgcctgaacgtctggcccgg ttgagctcatggggctttgacctcgccagccactggactcaacccgttcaggatgaagag gatgcggcaagctggcgcgagcgctggtttcacgcgcccttgccttttgttaccgacggt attgttgtgcaccaggctgcccgcccggcaggaaagtactggcagcccggtgagggtgag tgggccatcgcctggaaataccagccaccggaggtgagcagtgaggtacgatccgtagat ttctcaataggacgaacgggaaaggtggcggtcgtactgaatattcagcccgttcagctt gatgacaaaaccgtcaggcgtgtcaacatagggtcgttaaaacgctggcgagagcaggat gtcatcgcgggagatcaggtgacggttagcctggcaggacagggaattccccggctggag cgcgttatctggcgcgtggcgcagcgtgattaccctgagccaccgggttctgagcacttc actcatctgagttgttatacgttaacgccggattgccatcgccagttactggctcgcctg agctggctgagtcaaaagttcgtgctgaatattcccggcgttcagcgcagcacctggcag cgactactggataccggttgtattacacacctgttttcctggttgacgattacgccagaa cagattgccgctgcagcaggcatctcctctgaaagagcacagcaaatctggcataggttc gaattgacccgccagcaacctttgcgtcgctgggttaacgcattgggcatcgcgttgccc caaaaggcacttcgcgccctggccgataaagagtgggaacccttgctggctcgtgatgtg caaacctggcaagcgctgcccggcgtgggcgcaaggcgtgctgaacgcattgccgcacaa tttcaggatgccgggctgcggaagttgattacctttttgcagcagcagagcatcccggca tcatcagtgttcagggtggggataattgaagatgggcaagccgagtcgaaaccgcagtgc cagcaggcgggcaaagaaaccgaaaagtaa

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