Providencia alcalifaciens: CO695_03335
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Entry
CO695_03335 CDS
T05107
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pala
Providencia alcalifaciens
Pathway
pala03030
DNA replication
pala03410
Base excision repair
pala03420
Nucleotide excision repair
pala03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CO695_03335
03410 Base excision repair
CO695_03335
03420 Nucleotide excision repair
CO695_03335
03430 Mismatch repair
CO695_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pala03032
]
CO695_03335
03400 DNA repair and recombination proteins [BR:
pala03400
]
CO695_03335
Enzymes [BR:
pala01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CO695_03335
DNA replication proteins [BR:
pala03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CO695_03335
DNA repair and recombination proteins [BR:
pala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CO695_03335
NER (nucleotide excision repair)
GGR (global genome repair) factors
CO695_03335
MMR (mismatch excision repair)
DNA ligase
CO695_03335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CO695_03335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATG15382
LinkDB
All DBs
Position
complement(735983..737677)
Genome browser
AA seq
564 aa
AA seq
DB search
MYYFSVRKFWKFGWFCLLLQYAVSIAYGTEFVDSQKICHTLDDKLMGAEQLRLGEQLQEW
DRQYQIEGVSEVSDEVYDQILAQWRRGQRCLNLPDRLPQPVQPNTERLVKHPIPHTGLKK
LEFKEIAPWLESRHEVWLQPKVDGVAVTLHYENGHLVSMISRGDGSKGLNWREKADFIQG
IPKTISIKQSIVLQGELFWKLNEHVQKIDGGQNARSKVAGWLMRKDMPAQVTDDIGVFIW
SWPDNSTPMSQQLSELAMLGFDLAQRYSHPIVESQSIAQWRDHYYSISMPFATDGVVLKS
FPTPSSSAWRANQNSWSIAWKYPLKSIVSDVVDLTFRVGRSGVVNVIANIEPVRIDDKKV
SKIRLGSLNSWKQKDVLVGDKIQLTLSGHGAPLMEKVIWRQKPRQYLNTLPLENFHALSC
LSYSTDCASQFVARLTWLGKQLNIRGVGEKTWMVWVEKYGLSELLGWLSPDWQNRLPKTQ
QTANALEQLQQAQHQLTANWLKGLGIPLKSEQLEKIAAITTLSEPEQIEKMAVSETRKQA
LQQWLAAPEIKQALQTLQNLGISH
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtactatttttcagtcaggaagttctggaaatttggttggttttgcctattacttcaa
tacgcagtatcaatagcttatggtacagagttcgttgattcccagaaaatatgtcacaca
ttagatgataaattaatgggagcggaacaattacggctaggggagcagctacaagagtgg
gatcggcaatatcaaatagagggagtaagtgaggttagtgatgaagtttatgaccagatt
ctggctcagtggcgacgtggacagcgctgtctaaatttgcctgatagattgccacaacca
gtacagcctaatacggaacgattagtgaagcaccccattcctcatactgggttgaaaaaa
ttggaatttaaggaaatagcaccctggctagagtcacgtcatgaagtatggttgcaaccc
aaagtagatggtgtggcggtgactttgcactatgagaatgggcatttagtgtcaatgatc
agtcgaggtgacggtagcaaaggacttaattggcgagaaaaagcggattttattcagggg
atcccaaaaacaatttcaataaagcaatctattgttttacaaggagagttattctggaag
cttaatgaacatgtgcaaaaaatagatgggggacaaaatgcgaggagtaaagttgcgggt
tggttgatgcgtaaagatatgcctgcacaagtaacggatgatattggtgtgtttatttgg
tcttggcctgataactcgacgcctatgagtcagcaacttagtgagctggcaatgctagga
ttcgatttggcgcaacggtatagccaccccatagtagagagccaatctatcgcgcagtgg
cgtgatcactactattcaatctcaatgccattcgcgacggacggtgttgttctaaaaagt
tttccgacaccgtcatcatcagcttggcgagcaaaccaaaacagttggagtattgcctgg
aaatacccactaaaaagcattgtttcagatgttgttgatttaacttttcgggtaggaagg
tcgggagtagtgaatgtcattgcaaacattgaaccagtcaggatagatgataaaaaagtc
agtaaaatacgcttaggttcactcaattcgtggaaacaaaaagatgtgttagtgggagat
aaaattcagctgacgctatctgggcacggtgctccattaatggaaaaagtcatatggaga
cagaaaccgcgacaataccttaatacattaccattggaaaactttcatgcattgagttgt
ttatcttattcgacagattgtgcctctcagtttgttgctcggctcacttggttgggtaag
caacttaatattcgtggtgtcggtgaaaaaacatggatggtgtgggtagaaaaatatggg
ctgtcggagttactcggatggttatctcctgattggcaaaatagattacctaaaactcaa
caaaccgctaatgctcttgaacaacttcaacaagcacaacatcaactaacggcaaattgg
ttgaaaggattgggtattccgctaaagtctgaacaattagaaaaaatagcggcaattacg
acattgagtgaaccagaacagatagaaaagatggcggtatctgagacgaggaagcaagca
cttcaacagtggctggcagcgcccgaaattaaacaggcattacaaactttgcagaattta
ggcatcagccattag
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