KEGG   Aquipseudomonas alcaligenes: A0T30_11590
Entry
A0T30_11590       CDS       T04318                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
palc  Aquipseudomonas alcaligenes
Pathway
palc03030  DNA replication
palc03410  Base excision repair
palc03420  Nucleotide excision repair
palc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:palc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A0T30_11590
   03410 Base excision repair
    A0T30_11590
   03420 Nucleotide excision repair
    A0T30_11590
   03430 Mismatch repair
    A0T30_11590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:palc03032]
    A0T30_11590
   03400 DNA repair and recombination proteins [BR:palc03400]
    A0T30_11590
Enzymes [BR:palc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A0T30_11590
DNA replication proteins [BR:palc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A0T30_11590
DNA repair and recombination proteins [BR:palc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A0T30_11590
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A0T30_11590
   MMR (mismatch excision repair)
    DNA ligase
     A0T30_11590
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A0T30_11590
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD PTCB-BRCT DUF4796_N
Other DBs
NCBI-ProteinID: AMR66976
LinkDB
Position
2500947..2503316
AA seq 789 aa
MTDAAQRIAALRAELDEHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQ
RVGGEALSAFGEVRHEVPMLSLGNGFEEEDLRAFDRSVQGGLGLSGGDHTGDLFGGGAEV
EYSCEPKLDGLAVSLLYRDGQLVRGATRGDGSTGEDISANVRTIRNVPLKLKGEGWPAVL
EVRGEVYMPRAGFDELNARQAESGAKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVG
QVSGELPATQVGMLEQLKAWGVPISRELKLARGIEQCLAYYRDIGERRMALPYDIDGVVF
KVNNIEDQQQLGFRARTPHWALAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVA
GVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVAERRPADARPVHVPEQCP
VCGSAVERTQLVKRSKGRETTSEGSVYRCVGRLSCAAQLKQAIIHFASRRALDIEGLGDK
IVEQLVDTGLVASPADLYTLTYEQVVVLEGFADLSTRNLLAAIRDSARPTLARFIYALGI
PDVGEETAKLLARALGSLARIRVALPEVLTYLPDVGLEVASEIRNFFDDAHNLKVIDDLL
ARGIELQEEGDLSPEFSACATLAGFIDKLNIPFIAATGAEKLAARFGSLQGVISADWLDL
RQVERLNEKAAKSLRDFFDIPANAERAALIEAQLREFGMHWASEKKVVEGLPLAGQTWVL
TGTLEAMSRDVGKDKLESLGAKVAGSVSAKTACVVAGPGAGSKLAKANELGVKVMDEAEF
LALLAGYGR
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaccgacgccgcccaacgcattgccgcacttcgtgccgaactggatgagcacaattac
cgctattacgtactggacgagccgagcgtgccggacgccgagtacgaccgcctgtttcgc
gagctgcaggctctggaagccgagcaccccgagctggtgacgccggagtcgccgacccag
cgcgtcggtggcgaggcgctcagcgccttcggcgaggtgcgccatgaagtgcccatgctc
agcctgggcaacggtttcgaggaggaggacctgcgcgccttcgaccgcagcgtgcagggt
ggcctcggtctttccggtggtgaccataccggggacctgttcggtggcggcgccgaagtg
gaatacagctgcgagcccaagctcgacggcctggcggtcagcctgctgtaccgcgacggc
cagctggtgcgcggtgccacccgtggcgacggcagcaccggcgaggacatcagcgccaac
gtgcgtaccatccgcaacgtgccgctgaagctcaagggcgagggctggccggctgtgctg
gaagtgcgcggcgaggtctacatgcccagggccggattcgacgagctgaatgcgcgccag
gccgagagcggcgccaagaccttcgccaacccgcgcaatgcggctgccggcagcctgcgc
cagctcgatccgaagatcaccgccagccgcccgctggagttctgctgctacggggtcggc
caggtcagcggcgagctgccggccacccaggtcggcatgctcgaacagctcaaggcctgg
ggcgtgccgatcagtcgcgagctgaagctggcgcgcggcatcgagcagtgcctggcctac
taccgcgatatcggtgagcggcgcatggcgctgccctatgacatcgacggtgtagtgttc
aaggtcaacaacatcgaggaccagcagcaactcggtttccgcgcgcgcaccccgcactgg
gcgctggcccacaagttccccgcccaggaggagctcaccgaactgctcgatgtggagttc
caggtcggccgcaccggcgccgtcaccccggtggcgcgcctgaagccggtcaaggtagcc
ggcgtcaccgtctccaacgccaccctgcacaacatggatgaggtcgcgcgcctgggcctg
atgatcggcgacaccgtgatcatccgccgcgccggcgacgtcattccgcaggtgatgcag
gtggtggccgagcgccgcccggccgatgcccgcccggtgcatgtgcccgagcagtgcccg
gtgtgtggctcggccgtcgagcgcacccagctggtcaagcgcagcaagggccgcgaaacc
accagcgagggctcggtctatcgctgcgtcggtcgcctgtcctgcgccgcccagctcaag
caggcgatcattcacttcgcctcgcgccgtgccctggacatcgagggcctgggcgacaag
atcgtcgagcaactggtcgacaccggactggtggcctcgccagccgatctctacaccctg
acctacgagcaggtggtggtgctggaaggcttcgccgacctgtccacgcgcaacctgctg
gcggcaatccgcgatagcgccagaccgacgctggcgcgcttcatctacgccctgggcatc
ccggatgtgggcgaggaaaccgccaagctgctggcccgcgcgctgggctcgctggcgcgc
atccgcgtggctctgccggaggtgctgacctacctgccggacgtcggtctggaagtggcc
tcggagatccgcaacttcttcgacgatgcgcacaacctcaaggtcatcgatgacctgctg
gcccgtggcatcgagctgcaggaggagggcgacctcagtcccgagttctccgcctgcgcg
accctggcgggcttcatcgacaagctcaacatccccttcattgccgccaccggcgcggaa
aagctggcggccaggttcggcagcctgcagggggtgatctcggctgactggctggacctg
cgccaggtcgaacgcctcaacgagaaagccgccaagtcgctgcgcgatttcttcgacatc
cccgccaatgccgagcgcgccgcccttatcgaggctcagctgcgcgagttcggcatgcac
tgggcaagcgagaagaaggtggtggagggcttgcccctggcaggacagacctgggtgctg
accggcacgctggaggccatgagccgcgatgtcggcaaggataagctggagagcctgggg
gccaaggtggccggttcggtatcggcgaagaccgcctgcgtggtggcggggccgggtgcc
ggctccaagctggccaaggccaacgagttgggcgtgaaggtgatggacgaagcggagttt
ctggcgctgctggccggctacgggcgctga

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