Pseudomonas alloputida: LU682_008640
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Entry
LU682_008640 CDS
T09345
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03030
DNA replication
pald03410
Base excision repair
pald03420
Nucleotide excision repair
pald03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU682_008640 (ligA)
03410 Base excision repair
LU682_008640 (ligA)
03420 Nucleotide excision repair
LU682_008640 (ligA)
03430 Mismatch repair
LU682_008640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pald03032
]
LU682_008640 (ligA)
03400 DNA repair and recombination proteins [BR:
pald03400
]
LU682_008640 (ligA)
Enzymes [BR:
pald01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LU682_008640 (ligA)
DNA replication proteins [BR:
pald03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LU682_008640 (ligA)
DNA repair and recombination proteins [BR:
pald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LU682_008640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LU682_008640 (ligA)
MMR (mismatch excision repair)
DNA ligase
LU682_008640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LU682_008640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
WJR18873
LinkDB
All DBs
Position
1856641..1858971
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEGLDQPGAVDYSCEPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGKGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPVEVPSACPVCGSQVERTRLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLQFEQVVGLEGFAEVSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKDK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKAAELGVKVLDEDAFVTFLAEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatcctcgaactgcgtgccgagctcgatcagcacaattatcgc
tactacgtgctcgacgagcccagcgtgcctgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgctggaagctgaacacccgcacctggtaacccccgactcgcccacccagcgt
gtgggtggagctgccttggcggcgttcagccaggtacgccacgaagtgcccatgctcagc
ctgggcaacgccttcgaagaagccgacctgcgtgagttcggccgtcgcgtggtagaaggc
ctcgatcagccgggcgcggtcgactacagctgcgaacccaagctcgatggcctggccgtg
agcctgctgtaccgcgacggccagctggtgcagggcgccacccgtggcgacggcaccact
ggcgaagacatcagcgccaacgtacgcaccgtgcgcaacatcccgctcaagttgcagggt
aagggctggccggcagtgctggaggtgcgcggcgaggtgtacatgagcaaggccggcttc
gaccggctcaatgccgcccaggccgaggccggtggcaagaccttcgccaacccgcgcaac
gctgccgctggcagcctgcgccagctggattcgaaaattaccgccagccgcccgctggag
ttctgctgctatggcgttggccaggtgtccgagagtatcggcgacagccacatcggcatc
ctcgaacaactcaaggcctggggcctgccgatcagccgcgagctcaaacatgcggcgggc
atcgaagagtgcctggcctactatcgcgacattggcgagcggcgtaacagtctgccgtat
gagatcgacggggtagtgttcaaggtcaacagcctggccgcccagcgcgagctgggcttc
cgcgcccgtgagccgcgctgggcgattgcccacaagttcccggccatggaagagctgacc
gaggtgctggatgtcgagttccaggttggccgtacgggtgcagtaacgcctgtggcgcgg
ctgaagccggtcaaggtggccggtgtgacggtgtccaacgccaccctgcacaacatggac
gaaatcgcccgcctgggcctgcgtatcggcgacacggtgatcattcgcagggccggcgac
gtgatcccgcaggtgatgcaggtggtgctggagcgtcgtccgcaaggcgcccgcccggta
gaggtgccaagcgcatgcccggtctgtggctcgcaggtcgagcgtacccggctggtaaag
cgcagcaagggcaaggaaaccaccagcgaaggtgcggtgtaccgctgtgtcggccgcctg
gcctgtggcgcccagctcaagcaggcgatcattcattatgtgtcgcgccgtgccatggac
atcgacggtctgggtgagaagagcgtcgagcagttggtggatgaaggcctgatcggctcg
ccggctgatttgtacaagctgcagttcgagcaggtcgtcggcctggaaggcttcgccgag
gtgtctacccagaagctgctggatgccattgaagccagcaagcgcccgagcctggcgcgc
ttcatctacgcgctgggcatcccggatgtcggcgaggagaccgccaaggtgctggcccgc
tcgctgggcagcctggcgcgcgtgcagcaggcattgccgcaggtgctgacctatttgccg
gacatcggtctcgaagtggcctacgagatccacaatttctttgaagacgagcacaaccag
aaggttatccagcagctgctcgacagcggtatgcagttgcaggacgaaggtgagctggct
gccgaatttgccgccagcaccaccttggccgggatgatcgccaagctcgacattgcctcc
gtcggcccgaccggtgccgagaagttggtggccaggctcgacagcctggacaagatcatc
gccgccgacggcattgacctgcgccaggccctggcggccaagcaggccgacgcagtgcgt
gagttcttcaaggatgaagcgaaccagaaactggcccgggacatcgaagcccagctgctg
gcgttcggcatgcactggagcagcgagaagaaggtggccgaaggcttgccgctggccggc
cagacctgggtgctgaccggtacgctggagcgcatgagccgcgacattgccaaggacaag
ctggaaagcctgggggccaaggttgccggttcggtgtctggcaagacccattgcgtggtg
gctgggcctggggcaggctcgaagctggccaaggcggccgagttgggtgtgaaggtgctg
gacgaagatgcctttgtcacattcctggccgaacagggcatagcggtctag
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