Pseudomonas alloputida: LU682_027065
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Entry
LU682_027065 CDS
T09345
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03030
DNA replication
pald03410
Base excision repair
pald03420
Nucleotide excision repair
pald03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU682_027065 (ligB)
03410 Base excision repair
LU682_027065 (ligB)
03420 Nucleotide excision repair
LU682_027065 (ligB)
03430 Mismatch repair
LU682_027065 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pald03032
]
LU682_027065 (ligB)
03400 DNA repair and recombination proteins [BR:
pald03400
]
LU682_027065 (ligB)
Enzymes [BR:
pald01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LU682_027065 (ligB)
DNA replication proteins [BR:
pald03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LU682_027065 (ligB)
DNA repair and recombination proteins [BR:
pald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LU682_027065 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LU682_027065 (ligB)
MMR (mismatch excision repair)
DNA ligase
LU682_027065 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LU682_027065 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
DUF3701
RNA_ligase
HHH_2
Motif
Other DBs
NCBI-ProteinID:
WJR16759
LinkDB
All DBs
Position
5842864..5844564
Genome browser
AA seq
566 aa
AA seq
DB search
MPYLLLFALLFVLNTPLARAASCPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADE
LYDQSHERLNHLQQCFAVGTSPSPLASARGPVPHPVPHTGVDKLADRQAVARWMTGKTGV
WVQPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAVDLHLQGE
LYLRLDEHVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQQAERLAQL
ARLGFPDSQLYSIAIDTLEDAAHWREHWYRSALPFATDGVILRQGSRPPAERWQAKAPYW
IAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRLDI
RPGDQVAISLAGLTIPRLEHVVHRAVERQPITAPAPDQHHAHSCWQASEGCDEQFIARLT
WLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPGISRLTATQMLGSFD
QARSRPFDQWLRALGVPIGKHLPLTGNWQALASRSAGQWQTVPGIGAKRSRQLVEFFAAS
EVQAIAAQLAEAGIEGFRTPPQRIEQ
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacctgttgttgttcgccctgctatttgtgctgaacaccccattggccagggct
gcctcatgcccacactggaacccgcaacaggccaaggccgaagttgcgcaactgcgcgcg
acgcttgcccgatgggacgagcactaccatcggcagggcatagccctggtggccgacgaa
ctgtacgaccagagccatgagcgcctgaaccacctgcagcagtgcttcgcggttggcacc
agcccctcccccctggccagtgctcgcggcccggtcccccaccctgtgccgcataccggc
gtcgacaagctggcagaccgccaggccgtggcgcgatggatgaccggcaagaccggcgtg
tgggtacagcccaaggtcgacggtgttgcagtttccctcacttaccaacagggtcgattg
gtgcagttgaccagccggggggacggtgtacacggccatgactggagccgacacatccca
cagctcggcgctgtcacacggcagttgcccgaggcggtcgacctgcacttgcaaggtgag
ctgtatctgcgcctggacgaacatgtgcaagccaaggcaggcagcgccaacgcccggggt
accgtggcagggctgctcgcacgcaagcaactgactggcgcacaaggcaacgctatcggc
ctgttcgtgtggggctggccgcacggccccgagcaacaggccgaacgcctcgcccagctg
gcacgactgggttttccggacagccagctttacagcatcgccatcgacacgctggaggat
gcagcacactggcgcgagcactggtatcgctctgctctgcccttcgccaccgacggtgtg
atcctgcgccagggcagtcggccacctgccgagcgctggcaggccaaggcgccatactgg
atcgcggcctggaagtacccctatgcacaagccttggccgaagtacgcgacgtgcgcttt
cgggtcggccgcactggcagggtcacgcccgttcttcacgtgcaacccgttaccctcgat
gaccggcgcattacccaagtcagccttgggtcgctggcgcgctggcaacgcctggatatt
cgccctggcgatcaggtggccatcagccttgccgggctgaccattccgcggctcgaacac
gtcgtgcaccgcgctgtagagcgccaaccgataaccgcaccagcacccgaccagcatcat
gcccacagctgctggcaggccagcgagggctgtgatgagcagttcattgcccgactcacc
tggcttggcggtaaacagggcctggccttgccacgcaccgggcccggcacatggcgtcgg
ctggtcgaagcgggcctggtaacgtccatgaccgattggctgcagctcgatgccgagcgc
ctgcagcaggcccccggaatcagcagactcactgcaacacagatgctgggcagtttcgac
caagcccgctcacgcccgttcgatcagtggttgcgcgcccttggcgtgcccattggcaag
catttgccactgactggcaactggcaggcgctggcttcacgcagtgccgggcaatggcaa
accgtgcccggcatcggcgcaaaacgctcgcgccaacttgtggaatttttcgcggcctcc
gaggtgcaagccattgccgcacagttggccgaagccggcatagaaggtttccggacccca
ccccagcgcattgagcaatga
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