Pteropus alecto (black flying fox): 102883943
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Entry
102883943 CDS
T02993
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pale
Pteropus alecto (black flying fox)
Brite
KEGG Orthology (KO) [BR:
pale00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pale03036
]
102883943 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pale03400
]
102883943 (SMCHD1)
Chromosome and associated proteins [BR:
pale03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102883943 (SMCHD1)
DNA repair and recombination proteins [BR:
pale03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102883943 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
DUF3447
Motif
Other DBs
NCBI-GeneID:
102883943
NCBI-ProteinID:
XP_006920115
LinkDB
All DBs
Position
Unknown
AA seq
2001 aa
AA seq
DB search
MAAAGGGGPSVGTGQGGGGDGCRTVYLFDRREKESELGDQVVQVEERSDYAGFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLHSVNQLLLTATKERIEFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRKIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDDE
RFLHYLISEEKEKNSFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEKR
TSKEGGPFNNIDIEISMFEKGKAPKIVNLREIQDDMQTLYINTATDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKGARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTVKTLPLYYGSIEKFFLYGDHDGEVYATGGEVQIAMEPRALYDETRT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGPSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVVNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLINDIQPVLEASGLSLQYEEITKGPNCVIRGVTAKGLVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPVYTVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAS
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHL
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSIKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPNSLSTLGIAGIGLDK
SQLKTTFQENTQSISVRGIKFTPGPPGNKHLCFTWREFSDLIRVQLISGPPAKLLLIDWP
DLKVSIPVINGRELQNPLIVQLCDQWDNPAPIPQVKISLIKGNNLKLTPSNQQHKTDERG
RANLGVFSVNAPRGEYTMQIKAIYNKTTIEGPTIKLMVLPDPEKPIRLNVKYDKDASFLA
GGVFTDFLITVISEDDSIIKNINPAHISMKMWKLSNNGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAVPNKMGIYCIQFGLMDKTNTLNSEQILVDVLPNQPVKLVPKIQPDTPAVSN
VHSVTNRTLVKDLHLIITDEYNNQTGIDLVGTVIATIKGSDEEDTDTPLFIGKVKTLQFP
FVKGSTEITSLVLAENSPGKDSTEYYIVFEPQLPALSRTLKSYILPFMFSDDVKKQQQMQ
AITKKKDELSKYIGMYRSVFETSKQLIDEMKCQVEGAKLKEVQLRNELKTHNIDIPITQQ
MPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGNVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRNALDKLNRLTE
DLNSQLEYLQSPEMKKKKQELDEREKNLKLIEQKLGMTSTHKCSDSLRHPAKVEITDCPV
PLKRMRREATRQNRSVTKTDV
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggactggacagggcggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgtgagaaagagtcggagctcggcgaccag
gtggtgcaggtcgaggagcgctcggactacgcggggttccgtgcctctgtgtgccagaca
cttggcatttcacctgaagagaagtttgttattacaacaacaagtagaaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagttactctatacctgctacattcagtc
aatcagttattactaacagctacaaaagaacgaattgaattcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgccgaattaattgacaattcattgtctgctacttctcgtaacactgggattaga
aaaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaattgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccagtgcca
gtgccacgcagtttaaacagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagctagaatgataagcaaacctgcagattcccaagatgttcat
gagctcgtgctttctaaagaagattttgagaagaaggagaaaaataaagaatcaatatat
agtggatatattagaaacagaaagccatctgattctgttcatattacaaatgatgatgaa
cgatttctgcattatcttatctcagaagagaaagaaaaaaatagctttactgctgtgatt
attacaggagtacaaccagaacacatacagtacttgaaaaattatttccatctttggaca
agacagttagcgcatatttatcattactatattcatggtccaaaaggaaatgaaaaacgt
acatcaaaagaaggtggacctttcaacaacattgatatcgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaacacagcaactgatagttttgagttcaaagctcatgttgaaggagacggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcatacttgagaaa
ggagcaagagggaaaagaccaattttcgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaatt
gaatgctacaatagaatatctggtgcattatttactaatgacagattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaaatatgacaaacaaataaaatttacactttttaaaggaataatt
acacgttctgatcttccttctaaaaagcaaggcccctgggccacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacagtcaagacacttcctctc
tattatggaagcatagaaaagttttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaagttcaaattgcaatggaacctcgagcactgtatgatgaaacgagaact
gtaccaattgcaaagctggataggacagttgctgagaaagctgtaaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattagacctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggagaagcaatgcaaaaacttccaggaccaagtcatggagggtcaaagaaa
ctcctcgttgagctcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattacacattgaaattacaagttgtagttaatgaaagtaacgcagacact
tatgctggaagaccactaccatctaaagcaattaaattttccgttaaagagggtaagccg
gagaaattttcatttggtcttctcgatcctccttttcgtgttggagttccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaataaatgatattcaacca
gttcttgaagcaagtggtttatctttacaatatgaagaaataaccaagggaccaaattgt
gtaattcgaggtgttacagctaagggccttgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacaaattttgaaaattagattacta
ccaggtccccctcgtcgattgaaagtgaaacctgattctgaaattttggttatagaaaat
ggaacagccttcccatttcaggtagaagttttggatgaatcagacaatattacagcacag
ccaaaattgattgttcattgtaagttttcaggtgcacctaaccttccagtctacactgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaagttcagaatatt
aaaaaagaccagacccttaaagctaaaattgaaatacccagttgtaaagatgtggcatct
gtggagaagacaattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaagttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccattta
acatcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctataaaagatatgcgttat
tgccaagtttcatttcaagatgatcatgtatctttggaaagtgcatttacagtaagaccc
cttcccgacgaacctaaacatctaaaatgtgagttaaaaggtgggaaaacagttcagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcaatatggaaatcagatt
caagcattttcaccaaattctttatctaccttgggaattgctggaattggacttgataag
tcacagttgaaaactacttttcaggaaaatacacaaagtataagtgtaagaggcatcaaa
tttactccaggtcctcctggaaataagcatctttgttttacttggcgtgagttttctgac
cttattcgagtgcagctaatttctggaccaccagctaaacttcttcttatagactggcca
gatttaaaggtgtccattccagtaattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctataccacaggttaaaataagtctaata
aaaggtaacaatttaaagctcactccttcaaatcaacagcataaaacagatgaaaggggc
agggcaaatttgggagtattcagtgttaatgcccctagaggagaatatacgatgcagatt
aaagccatctataacaagactaccatagaaggacctacaattaaattaatggttcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtgttttcactgattttttgattactgttatttctgaagatgatagtatcattaaa
aatattaatcctgcacatatttccatgaaaatgtggaagctctctaacaatgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcagttcctaataaaatggggatatattgtatccag
tttggtttaatggataaaacaaatactcttaacagtgaacagattttagttgatgttcta
cctaatcaacctgtgaagttagtacctaaaattcagccagatacaccagctgtttcaaat
gttcactcagttaccaataggaccttggtcaaagatctacatcttattatcacggatgag
tacaacaatcagactggaattgatttggtcggcactgtaatagctaccattaaaggttct
gatgaggaagatactgatacaccactctttatcgggaaagttaaaacacttcaatttccc
tttgtgaaaggttcaactgaaatcacgagtctagtactggcagaaaatagccctggaaag
gatagtactgaatattatattgtatttgagcctcagctgccagctttgtcaagaacatta
aaatcatacatcctaccatttatgttttctgatgatgttaagaagcaacaacagatgcaa
gcaattaccaaaaagaaggatgaattatctaaatatatcggaatgtatagaagtgtattt
gaaaccagcaaacaacttattgatgaaatgaagtgccaggttgaaggagcaaaattaaaa
gaggtccagttgcgaaatgaactaaaaacacataatattgacattcctataacacaacag
atgccacacattgaagcacttttgaaaagaaagttgtcagaacaggaagaactaaagaaa
aaacctagaagatcatgtactcttccaaactatactaaaggcagtggaaatgttttggga
aagattgcacatctggcacaaatcgaagatgatagagctgcaatggttatttcctggcat
ctggcaagtgatatggattgtgttgtcaccctgaccactgatgctgcgcgtcgtatctat
gatgaaactcaaggtcgtcagcaggtgttgccccttgattctatttacaagaagactctt
ccagactggaaaagacctctacctcattaccgaaatggaaaattatactttaaacccatt
ggagatccagtctttgcccgagatttgttaacatttccagataacatagaacattgtgaa
acagtatttggaatgctgttaggagacaccattattttggacaatttggatgctgccaat
cattatagaaaagaggttgttaaaattacacattgtcctacactgctcaccagagatgga
gatcgaattcgaagcaatggaaagttcgggggccttcagaataaagctcctccaatggac
aaacttcggggaatggtatttggagccccagtaccaaaacagtgcctggtcttaggggaa
caaatagatcttcttcagcagtatcgtaatgctctggacaagttgaaccgtctgactgag
gaccttaatagtcaattagagtaccttcagtctcctgaaatgaagaagaaaaaacaggaa
cttgatgaacgagaaaaaaatctgaaattaatagagcaaaaactaggtatgacttccaca
cataagtgtagtgattcattgcgtcatccagcaaaggttgaaataacagattgtccagtt
cctcttaaaagaatgagaagagaagctacaagacaaaataggtctgtaaccaaaacagat
gtgtga
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integrated database retrieval system
