Pantoea alfalfae: K6R05_00520 Help Entry K6R05_00520       CDS       T09440                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism palf  Pantoea alfalfae Pathway palf03030   DNA replication palf03410   Base excision repair palf03420   Nucleotide excision repair palf03430   Mismatch repair Brite KEGG Orthology (KO) [BR:palf00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     K6R05_00520 (ligB)    03410 Base excision repair     K6R05_00520 (ligB)    03420 Nucleotide excision repair     K6R05_00520 (ligB)    03430 Mismatch repair     K6R05_00520 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:palf03032]     K6R05_00520 (ligB)    03400 DNA repair and recombination proteins [BR:palf03400]     K6R05_00520 (ligB) Enzymes [BR:palf01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      K6R05_00520 (ligB) DNA replication proteins [BR:palf03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      K6R05_00520 (ligB) DNA repair and recombination proteins [BR:palf03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      K6R05_00520 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      K6R05_00520 (ligB)    MMR (mismatch excision repair)     DNA ligase      K6R05_00520 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       K6R05_00520 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase Nlig-Ia HHH Motif Other DBs NCBI-ProteinID:  QZX95761 LinkDB All DBs Position 118125..119876 Genome browser AA seq 583 aa AA seqDB search MKGFGWPLLAAVLWIVIWPAHSAVCPVWTPIRATEEIRRLQQQLQHWDDAYYRQGQSPVV DADYDALQQRLIQWQHCFSPYQPVYTPQLPGNGKSLHPVAHTGVKKMRDKLALAYWMQGR GDLWVQPKVDGIAVSLVYRHGRLVSLLSRGDGLRGEDWLAKAAWIPAIPLNIDTRLDEVV LQGELFLTMTGHQQAVDGGKNARSQVAGAMMSKQRIPLLNSLNVFIWAWPDGPAKMTERL EQLSRWGLGVAAKWSYRVKDEEEVATWRERWFHAALPFVTDGVVVHQSLRPAGKNWLPGE GTWAVAWKYQPPEVSAEVLSVDFPVGRTGKIAAVLNLQPVQLDDKTVRRVNVGSLRRWQE SDIVAGDVITLSLAGQGIPRLERVIWRVAERDYPQPPDASHYTPLSCYTFSAECQKQLLA KLRWLSQKTVLNIPGVERSTWLRLLETGSMTHLFGWLTLTPEQITAATGFSPERAGQLWH RFNLTRQQPFRRWVDALGISLPRKALKSLPDQQWESLMQRDIAGWQALPGVGAALAKRLV AQFHDARVQRLIAFLQQQGIPSSLMLGMGIVENRQTEAEAQRQ NT seq 1752 nt NT seq  +upstreamnt  +downstreamnt atgaaaggattcggctggccgctgttggcggctgttttgtggatcgtcatatggcctgcg catagcgccgtttgtccggtctggacaccgattcgggcgactgaagagatccgccgcctg caacagcaactacaacactgggatgacgcttactatcgtcaggggcagagtccggtggtg gatgcggattatgacgctcttcaacagcgactgattcagtggcagcactgctttagccct tatcagccggtttacaccccgcaactgccgggtaatggcaagtcattgcatccggtcgcc cacacaggtgtaaaaaagatgcgcgacaagctggcgctggcttactggatgcaggggcgt ggcgatctctgggtgcagcccaaagttgatggcatcgccgtttcactggtatatcgccac ggcaggctggtctccctgttaagccgtggcgatggattacgtggtgaggattggctggct aaagccgcctggatcccggcgattccgctgaatatcgacacccgtctcgacgaggtggtg ttgcagggtgagctattcctgacgatgaccggtcatcaacaggccgttgatggtggtaaa aatgcgcgctcacaggtggccggggccatgatgagcaagcaacggattcctctgctgaat tcgcttaatgttttcatctgggcctggccagatggtcccgccaaaatgacagaacggctt gagcaactcagccgctggggactgggcgttgccgcaaaatggagttaccgcgtcaaagat gaagaggaggtcgccacctggcgggagcgctggttccatgctgcgctaccttttgtcact gatggcgtggtggttcatcagagccttcgtcctgcgggaaaaaactggctgccgggagag ggcacctgggctgttgcctggaagtatcagcctcctgaagtcagcgctgaagtgctctcc gttgattttccggttggccgaaccgggaaaatagctgccgtccttaatctgcagccggtg cagctggatgacaagactgtcaggcgggtcaatgtcggatccctgcgtcgctggcaggag agcgatattgtggcgggtgatgtgattacgctgagtctggcgggtcaggggatcccccgg ctggagcgggtgatctggcgcgtggcagagcgcgactatcctcagcctcccgacgcgtcg cattacacgccgctaagctgttacaccttcagtgcggagtgccagaagcagttactggca aaattacgctggctcagtcagaaaacggtgctgaatattccgggcgttgagcgcagcacc tggctgcgcttactggaaaccggcagtatgacgcatctgttcggctggctgacgttaaca ccggaacagatcactgccgcaacgggcttctctccggaacgggcgggtcagctctggcat cgttttaatctcacccgtcagcagccgtttcgtcgctgggtggatgccttaggtatttca ctgccgcggaaggccctgaagtcactgcccgatcagcagtgggagagcttaatgcagcgg gatattgcgggctggcaggcgttaccgggtgttggggctgcgctggcaaagcgcctggtt gcgcagttccatgatgcccgtgtgcagaggctgatcgcgttcctgcagcagcaaggcata ccttcttccttaatgctcgggatggggatagttgaaaatcggcaaaccgaggcggaagcg cagcgccagtaa

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