Pantoea alfalfae: K6R05_05530
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Entry
K6R05_05530 CDS
T09440
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palf
Pantoea alfalfae
Pathway
palf03030
DNA replication
palf03410
Base excision repair
palf03420
Nucleotide excision repair
palf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6R05_05530 (ligA)
03410 Base excision repair
K6R05_05530 (ligA)
03420 Nucleotide excision repair
K6R05_05530 (ligA)
03430 Mismatch repair
K6R05_05530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palf03032
]
K6R05_05530 (ligA)
03400 DNA repair and recombination proteins [BR:
palf03400
]
K6R05_05530 (ligA)
Enzymes [BR:
palf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6R05_05530 (ligA)
DNA replication proteins [BR:
palf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6R05_05530 (ligA)
DNA repair and recombination proteins [BR:
palf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6R05_05530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6R05_05530 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6R05_05530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6R05_05530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
DUF4874
DZR_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZX96687
LinkDB
All DBs
Position
1158986..1161004
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEDHPDLITPDSPTQ
RVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDDITYCCELKLDGAA
VSLMYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIFMTQRG
FEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHM
GRLQQFKSWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPVCGSEVERVEG
ESVSRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVNTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMD
ADLEALIAVPDVGKVVAAHVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgtccaggatcacatcaccgaactgcgcaccacgttgcgccatcacgaatat
ctctatcacgtcatggatgcgccggaagtaccggatgctgaatacgatcgtctgatgcgc
gaactgcgtcaactggaagaggaccatcccgatctcatcaccccggactcgccaacgcaa
cgtgtgggcgctgcgccgctgacggtattcgagcaggtccgccatgaggtgccgatgctg
tcgctggataacgcctttgatgaagccacgttcatggccttcaacaagcgggtgcaggat
cggctgaaaagcagtgacgacattacttactgctgcgaactcaagcttgatggcgctgca
gtcagcctgatgtatgaaaatggcctgctggttcgggctgcgacgcgcggtgacggcacg
accggcgagaacattaccgccaatgttcgtaccattcgcgctatcccgctacggctaaaa
ggcgacaacattccggcccggctggaagtacgcggcgaaatatttatgacgcagcgcggc
ttcgaaaagctgaatgaggaagcgcgacgcactgacggcaaagtctttgctaacccgcgt
aacgcagcagcaggttctctgcgtcagcttgatccgcgcattaccgctaaacgtccactg
accttcttctgctacggttttggcctgctggaaggcggggagatgccgcacagtcacatg
gggcgtctgcaacagttcaaatcctggggcctgccggttagcgaccgcattaagctggtg
cataacgccgaagaggccctggccttctatcgagatattgagcaacagcgtccgaacctg
ggttttgatattgatggtgtcgtaatcaaagtagattcacaggctctgcaggagcagttg
gggtttgttgcgcgcgcgccgcgctgggcgattgcttttaaattcccggcacaggaacag
ctgacctgggtacgtgacgtcgaatttcaggttggccgcacgggtgcgatcacaccggtg
gctcgccttgagccggtgcaagtcgcaggcgttatcgtcagcaatgccacgctgcataat
gcggatgaaatcgagcggctgggattacgcatcggagatcgggtcgtgattcgccgcgcc
ggtgatgtaatcccgcaggtggtcaacgtggtgattgctgagcgccctgaagagacgcgt
gaagtggtctttcctgcccattgcccggtctgtggttccgaggtggagcgggtcgaaggg
gagtcggtctcgcgctgcaccggcggtctgatctgcggtgcgcaacgcaaagaggcactg
aagcattttgtctcgcgtcgggcgctggatgttgacggtatgggcgataagattatcgac
cagctggtggagaaagagtacgtcaatacgcccgccgatctgttccgtcttacggcgggc
aagctgaccggactggatcgcatggggccgaaatcggcgcaaaacgttgtcgatgcgctg
gagaaagcgaagtcgaccacgctggctcgttttctctatgcgctgggcattcgcgaagtg
ggtgaagccaccgccgccaatctggctaaccattttggtgagctgcaaaaagtgatggat
gccgaccttgaggcgctgattgccgtgccggatgtcggcaaagtcgttgccgcacacgtg
cgtaacttcatggaagaggagagcaaccgtgaggttattcgtcagctgaccgaagagatt
ggcattcactggccgcaggtggtggtggtgaaagccgaagagatcgacagtccgttcgcc
ggtaaaaccgtggtgctgaccggttcgctgtcgcagatgaaccgcgatgatgccaaagcg
cagcttatcgcgctgggtgcaaaagtcagcggcagcgtatcgaagaaaaccgatctgctg
attgccggtgaagcggccggttcaaagctggcgaaagcacaggagctgggcattgaagtg
attgatgaagcggaaatgatccgtctgctgggtgcctga
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