Parasphingopyxis algicola: HFP57_08950
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Entry
HFP57_08950 CDS
T06669
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palg
Parasphingopyxis algicola
Pathway
palg03030
DNA replication
palg03410
Base excision repair
palg03420
Nucleotide excision repair
palg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFP57_08950 (ligA)
03410 Base excision repair
HFP57_08950 (ligA)
03420 Nucleotide excision repair
HFP57_08950 (ligA)
03430 Mismatch repair
HFP57_08950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palg03032
]
HFP57_08950 (ligA)
03400 DNA repair and recombination proteins [BR:
palg03400
]
HFP57_08950 (ligA)
Enzymes [BR:
palg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HFP57_08950 (ligA)
DNA replication proteins [BR:
palg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HFP57_08950 (ligA)
DNA repair and recombination proteins [BR:
palg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HFP57_08950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HFP57_08950 (ligA)
MMR (mismatch excision repair)
DNA ligase
HFP57_08950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFP57_08950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DivIC
Seryl_tRNA_N
Motif
Other DBs
NCBI-ProteinID:
QLC25138
LinkDB
All DBs
Position
complement(1809650..1811794)
Genome browser
AA seq
714 aa
AA seq
DB search
MSGGEISEADAANELMRLAKQIAEHNKLYHVEDSPEISDADYDALVRRNAQLEAQFPHLV
REDSPSKQVGAAIAHSPLSKVQHAQRLYSLDNGFSDEDIAEWVTRVRRYLNLAEDDPVAM
TAEDKIDGLSLSIRYDDRRLVLAATRGDGQTGEDVTANARTIADIPDTLPAGAPDIFEMR
GEVYMSKQAFADLNARQEEAGDKIYANPRNAAAGSLRQLDPAITESRNLNFLAHGWGVAS
DVPGETQMAVMDALRDWDIPVSDHLERLETFEAMLGQYREIERLRAEMPYDIDGVVYKVD
RLDWQARLGFVAKAPRWALAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLTPVTVGGVV
VSNVTLHNRDEIDRLGVRPGDRVVVQRAGDVIPQVVENLTRDEKRDPYAFPDACPRCGSE
AVAAEGEVDVRCTGGLICPAQRVQRLIHFVSRVAMDIDGLGEKSIREFFDLGWLDKGPAD
IFRLHEKREELLDRDGWQDKSVDNLLAAIEAARTQGFDRLLFGLGIRHIGDVTARDLART
FHDPESLIKAVGELQAQRDALEATVAKLKESEGDEAADKARRKGLGEIAQSLAISGIGPT
VIEALTDFFHEPHNRKAWDDLLGEVSPPRFEVEVQESPMSGKTVVFTGKLETMSRDEAKA
QAERLGAKAAGSVSAKTDLVVAGPGAGSKLKKAAELGIEVIDEAGWAEIVAAAG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcgaaatctccgaggcagacgccgccaacgagctgatgcggctggcgaag
cagatcgccgagcataacaagctctaccatgtcgaggattcgccggaaatctcggacgcg
gattatgacgcgctggtccgccgcaatgcgcagctggaggcgcaattcccgcatctcgtc
cgcgaggacagcccgtcgaagcaggtcggcgcggccatcgcccattcgccgctctccaag
gtgcagcatgcgcagcggctctattcgctcgataacgggttctcggacgaggatatcgcc
gaatgggtgacgcgcgtcaggcgctatctgaacctggccgaagacgatcccgtcgcgatg
acggcggaggacaagatcgacgggctctcgctgtcgatccgctacgacgatcgcaggctc
gttctcgcggcgacgcgcggcgacgggcagacgggcgaggacgtgaccgccaatgcgcgg
acgatcgccgatattcccgatacactgccggccggcgcgcccgatatcttcgagatgcgc
ggcgaggtgtacatgtcgaaacaggcctttgccgacctcaacgcgcggcaggaggaggcg
ggcgataagatctatgcgaacccgcgcaacgccgccgccgggtcgctgcgccagctcgat
ccggcgatcaccgaaagccgcaacctcaatttccttgcgcatggctggggcgtcgcgagc
gatgtgccgggcgagacgcagatggcggtgatggatgccttgcgcgactgggacatcccg
gtgtccgatcatctcgagcggctggaaacgttcgaggcgatgctcggccagtatcgggaa
atcgaacggctgcgcgccgaaatgccctatgatatcgacggcgtcgtctacaaggtcgac
cggctcgactggcaggcgcgattggggttcgtcgccaaggcgccgcgctgggcgctggca
cacaaattcccggccgaacgcgccgaaacgacgctcgaggcgatcgacatccaggtcggg
cgaacgggcaagctgacgccggtcgggcggctgacgccggtgacggtcggcggggtcgtc
gtctccaacgtcaccctgcacaatcgcgacgagatcgaccggctcggcgtgcgccccggc
gaccgggtggtcgtccagcgggcgggggacgtcattccgcaggtcgtcgaaaatctgacg
cgcgacgaaaaacgcgatccgtacgcctttccggacgcatgcccgcgctgcggttccgaa
gccgtggcggcggaaggcgaggtcgatgtccgctgcacgggcggcctgatctgtccggcc
cagcgcgtccagcggctcatccatttcgtcagccgggtcgcgatggatatcgacgggctc
ggcgaaaagagcatccgcgaatttttcgatctcggctggctcgacaagggtccggccgac
atcttccggctccacgaaaagcgcgaggaattgctggatcgggacggttggcaggataag
tcggtggataacctgttggcggcgatcgaggcggcgcggacccagggtttcgaccgtctg
ctgttcggccttggcatccgccacatcggcgacgttaccgcgcgcgatctggccaggact
ttccacgatcccgaaagtctcatcaaggccgtcggtgaattacaggcgcagcgcgacgcg
ctcgaggcgactgtagcgaaactcaaggaaagcgagggggacgaggcagcggacaaggcg
cgccggaaagggctcggcgaaatcgcccagtcgctggcgatatccggcatcggtcccacc
gtgatcgaggcgctgaccgacttcttccacgaaccgcacaatcgcaaggcgtgggacgac
ctgctcggcgaggtctcgccgccgcgcttcgaggtcgaggtgcaggagagcccgatgtcg
ggaaagacggtcgtcttcaccggcaagctcgaaacgatgagccgcgacgaggccaaggcg
caggccgaacggctgggcgccaaggccgcgggatcggtcagcgcgaagaccgatctggtt
gtcgcggggccgggcgcgggctccaaactcaaaaaggcggccgaactcggcatcgaggtc
atcgacgaagccggctgggcggagatcgtcgcggcggcggggtga
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