Pantoea alhagi: B1H58_13070
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Entry
B1H58_13070 CDS
T05014
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palh
Pantoea alhagi
Pathway
palh03030
DNA replication
palh03410
Base excision repair
palh03420
Nucleotide excision repair
palh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1H58_13070 (ligA)
03410 Base excision repair
B1H58_13070 (ligA)
03420 Nucleotide excision repair
B1H58_13070 (ligA)
03430 Mismatch repair
B1H58_13070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palh03032
]
B1H58_13070 (ligA)
03400 DNA repair and recombination proteins [BR:
palh03400
]
B1H58_13070 (ligA)
Enzymes [BR:
palh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B1H58_13070 (ligA)
DNA replication proteins [BR:
palh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B1H58_13070 (ligA)
DNA repair and recombination proteins [BR:
palh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B1H58_13070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1H58_13070 (ligA)
MMR (mismatch excision repair)
DNA ligase
B1H58_13070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1H58_13070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DUF4874
WHD_GPIID
DUF1815
Motif
Other DBs
NCBI-ProteinID:
ARJ42870
UniProt:
A0A1W6B6Z1
LinkDB
All DBs
Position
2790421..2792448
Genome browser
AA seq
675 aa
AA seq
DB search
MESVQEKITELRTTLRHHEYLYHVLDAPEVPDAEYDRLMRELRALEEQHPDLITPDSPTQ
RVGAAPLTAFEQVRHEVPMLSLDNVFDEAGYLAFNKRVQDRLKSSDDITFCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMNQVG
FEKLNAEARRTGGKIFANPRNAAAGSLRQLDPRITARRPLTFFCYGIGLVEGGELPHSHW
ERLQQFKAWGLPVSDRIRLHHSANEVLDFYHQVERDRPQLGFDIDGVVIKVDSQELQERL
GFVARAPRWAIAFKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIARLGLRIGDRVVIRRAGDVIPQVVNVVESERPDDTQEITFPSHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLSAG
LLTGLDRMGPKSAQNIVDALNKAKATTLPRFLYALGIREVGEATAVNLANHFGSLEKIMD
ADLDALIAVQDVGKIVASHVRNFMEEESNREVIRQLVEDIGIHWPEITLVNVEELDNPFA
GKTLVLTGSLSIMSRDEAKERLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLDSQNG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtacaagaaaaaatcaccgagctgcgaaccacgcttcgtcatcatgaatat
ctctatcatgtgctggatgcgccggaagttcccgatgcggaatatgaccgcctgatgcgc
gaactgcgtgcgctggaagagcagcatcccgatttaatcacgcctgattcacccacccaa
cgcgtgggtgccgcgccgttaaccgcttttgaacaggtacgtcatgaagtgccgatgctg
tcgctggataacgttttcgacgaggcgggctatctggcgttcaataagcgcgtccaggat
cggctgaagagcagcgatgatattactttttgctgcgagctaaagctggatggcctggca
gtgagtttgctgtatgaaaatggcctgctggtgcgtgccgctacccgtggcgacggaacg
accggtgaaaatatcacggccaatgtgcgcaccatccgcgcgattccgctgcgtcttaaa
ggcgataatattcctgcacggctggaagtgcgtggcgaagtgtttatgaatcaggtggga
tttgaaaagctaaacgccgaagcgcgccgcaccggtggcaaaatttttgccaacccgcgt
aatgcggcagcgggatcgctgcgccagcttgatccccggattaccgccaggcgtccgctg
accttcttctgctacggcatcggtctggtagagggcggagagctgccgcacagtcactgg
gaacgcttgcagcagtttaaagcctgggggctcccggtcagcgatcgtattcgtcttcat
cacagcgctaatgaagtactggatttttatcatcaggtagagcgcgatcgtcctcaactt
ggctttgatattgatggcgtggttatcaaggttgattcgcaggagctgcaggaacgtctg
ggttttgtggcgcgcgcgccacgctgggcaattgcgtttaaattcccggcgcaggagcag
cttacgcgcgtacgtgacgtagagtttcaggttggtcgtaccggcgcaataacaccggta
gcacgtctggagccggtacaggttgcaggcgttatggtcagcaacgcaacgttgcataat
gccgatgagatcgctcgccttggcctgcgaattggcgatcgcgtggttatccgccgtgcg
ggtgatgtgataccgcaggtggtcaatgtagtggaatcagagcgccctgacgatacgcaa
gaaattactttccccagccactgcccggtttgcggttcggacgtagagcgagtggaaggc
gaggcggtaacccgctgcactggcggcctgatttgcggcgcgcagcgtaaagaggcgctg
aagcattttgtctcgcgtcgtgcgatggatgtcgagggcatgggcgataaaatcatcgat
cagctggtggaaaaagagtatgtgaaaacgcccgccgatctgttccgcctcagcgccggt
ctgctgaccggtctggatcgcatggggccgaaatcggcgcaaaacattgtcgatgcgctt
aataaggcgaaagccactaccttgccgcgttttctctatgcgttaggcattcgtgaagtt
ggtgaagcgacggcggtgaacctggcaaatcatttcggctcgctggaaaagatcatggat
gccgatctggatgcgctgattgccgtgcaggatgtgggcaagattgtcgcttcccacgtg
cgcaattttatggaagaagagagcaaccgtgaagttatccgccagctggtcgaggatatt
ggtatccactggccagaaattaccctggtgaatgtcgaagagctggacaatccgtttgcc
ggtaaaaccctggtgctgaccggctcgctgagtattatgtcacgcgatgaggcgaaagag
cgtttaaccgcgctgggagccaaagttagcggtagcgtatcaaagaaaaccgatttggtg
atcgcgggcgaagcggcaggttccaagctggctaaggcgcaggagctgggaatcgaggtc
attgatgaagcggaaatgatccgcctgctggatagccagaatggataa
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