Pendulispora albinea: LZC94_09465
Help
Entry
LZC94_09465 CDS
T10974
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palj Pendulispora albinea
Pathway
palj03030
DNA replication
palj03410
Base excision repair
palj03420
Nucleotide excision repair
palj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZC94_09465 (ligA)
03410 Base excision repair
LZC94_09465 (ligA)
03420 Nucleotide excision repair
LZC94_09465 (ligA)
03430 Mismatch repair
LZC94_09465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palj03032
]
LZC94_09465 (ligA)
03400 DNA repair and recombination proteins [BR:
palj03400
]
LZC94_09465 (ligA)
Enzymes [BR:
palj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LZC94_09465 (ligA)
DNA replication proteins [BR:
palj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZC94_09465 (ligA)
DNA repair and recombination proteins [BR:
palj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LZC94_09465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZC94_09465 (ligA)
MMR (mismatch excision repair)
DNA ligase
LZC94_09465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZC94_09465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
Auto_anti-p27
PTCB-BRCT
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WXB17493
LinkDB
All DBs
Position
complement(2308070..2310013)
Genome browser
AA seq
647 aa
AA seq
DB search
MSKSTKEKAEIERLESEIRHHNRLYWDLATPEISDVDYDKLVRRLKELAPDAPVLSEMGP
SKDPARVLGQEFRHKEPMLSLDKCYEPAELEEWASSFDGKVVAMPKFDGIACALHYEGGR
LKVAATRGDGQVGDDITVNVLEIKDVPAKIPTKETIEVRGEIYMRLSVFAKFKAAGMANP
RNLTAGAIKQKDKAKSAAYELSFAAYDLIGTKADSQVTELEELVRFGFAKMDYLVLERDR
IMEGFEKFTEWRPNLDYEIDGVVYKVDSIKEQRRLGQTSHHPRFAIAYKFQGDSGITVLR
QVEWSVARTGAITPVAIVEPVNLSGVTVTRASLHNVAFIGSLGLTLGAHVTLVRRGGVIP
NLENVTTPGTEPVPIPEQCPSCGSPVVRERDFIFCTTPNTCKAAVIGQLAHYAATVGMLG
FGDAILEHGYNAGILRSPVDFYKLQWEEIAKFERCGEKIAKKLVAEVDKKRNLELATFLR
ALGISELGKHVSAILADRYRTLDLVLAVTEEELLETHSIGSSIAKSVVAGLAEARPVIEA
LREHVTIAAPAHQDGGAEGPLSNMSFVFTGKMVAFSRSEAEKRVRALGGAVLSSVTKQLT
YLVVGADKSGPKSTKEKAAEKLIGQGATLKVLSEDELLAMLESDKAS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaagagcaccaaggaaaaggccgaaatcgaacgtctcgagagtgaaatccgacac
cacaatcgactgtattgggatctggcgacccccgaaatctccgacgtcgattacgacaag
ctcgtacgccgcttgaaagagctcgcccccgacgcccccgtgctctccgagatgggccct
agcaaagaccccgcccgcgtcctcggccaagagttccgccacaaagagccgatgctctcg
ctcgacaaatgctacgagcccgccgagctcgaagagtgggcctcgtccttcgacggcaag
gtggtggccatgcccaagttcgacggcatcgcctgcgcgctgcactacgagggcggccgc
ctcaaggtcgccgccacccgcggcgatggccaggtgggcgacgacatcaccgtcaacgtc
ctcgagatcaaagacgtccccgcgaagatcccgaccaaggagaccatcgaggtgcggggc
gagatttacatgcgcctctccgtctttgccaagttcaaggccgccggcatggccaacccg
cgcaacctcacggcgggcgccatcaagcaaaaagacaaggccaaatcggcggcctacgag
ctctccttcgcggcctacgatctcattggcaccaaggccgactcccaagtcacggagctg
gaggagctcgtccgattcggctttgcgaagatggattacctggtgctcgagcgcgaccgc
atcatggagggcttcgaaaagttcaccgagtggcggccgaatctggactacgaaatcgac
ggcgtcgtttacaaagtcgactccatcaaagagcagcgccgattggggcagacgtcgcac
catccccgcttcgccattgcgtacaagttccagggcgactccggtattacggtgctccgc
caggtggagtggtcggtggcgcgcacgggggccatcaccccggtggccatcgtcgaaccc
gtgaacctctcgggggtcaccgtcacccgcgcctccttgcacaacgtggccttcatcggg
agcctggggctgaccttgggcgcgcacgtcaccctcgtccggcgcggcggcgtcattccc
aacttggagaacgtcaccaccccgggcaccgagcccgtgccgatccccgagcaatgtccg
agctgcggctcgccggtcgtgcgcgagcgcgatttcatcttttgcaccacgcccaatacg
tgcaaagccgcggtcatcgggcagctcgcgcactacgcggccaccgtgggcatgctcggc
ttcggcgacgccattctggagcacggctacaatgcgggcatcctccgctcccccgtcgat
ttttacaaactccaatgggaggagatcgcaaagttcgagcgatgcggcgagaagatcgcc
aaaaagctggtggcggaggtcgacaagaagcgcaatctggagctcgcgaccttccttcgc
gcgctcggtatctcggagctcggaaaacatgtctccgccattttggccgatcgataccgc
accctcgacctcgtgctcgcggtgacggaagaggagctcctcgagacgcacagcatcggc
tcgtccatcgcgaagagcgtggtcgccggcttggccgaggcccgcccggtcatcgaggcg
ctgcgcgagcacgtcaccatcgcggcgcccgcgcaccaagacggcggcgccgagggcccg
ctcagcaacatgtcgttcgtgttcaccggcaagatggtggccttctcccgcagcgaggcc
gaaaagcgcgtgcgcgcgctgggcggcgcggtgctcagcagcgtcaccaaacaactgacg
tatttggtggtgggcgcggacaagagcggccccaagtcgaccaaggaaaaagccgccgag
aagctcattggacagggcgccaccctcaaggtgctctccgaggacgagctcctggcgatg
ttggagagcgacaaagcgtcgtag
DBGET
integrated database retrieval system
