Paludicola sp. MB14-C6: RBG61_01520
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Entry
RBG61_01520 CDS
T09321
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palm
Paludicola sp. MB14-C6
Pathway
palm03030
DNA replication
palm03410
Base excision repair
palm03420
Nucleotide excision repair
palm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBG61_01520 (ligA)
03410 Base excision repair
RBG61_01520 (ligA)
03420 Nucleotide excision repair
RBG61_01520 (ligA)
03430 Mismatch repair
RBG61_01520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palm03032
]
RBG61_01520 (ligA)
03400 DNA repair and recombination proteins [BR:
palm03400
]
RBG61_01520 (ligA)
Enzymes [BR:
palm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBG61_01520 (ligA)
DNA replication proteins [BR:
palm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBG61_01520 (ligA)
DNA repair and recombination proteins [BR:
palm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBG61_01520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBG61_01520 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBG61_01520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBG61_01520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
RNA_pol_A_CTD
zf-NADH-PPase
DUF6085
DUF3877
Motif
Other DBs
NCBI-ProteinID:
WMJ23369
UniProt:
A0AA51CP14
LinkDB
All DBs
Position
complement(333923..335899)
Genome browser
AA seq
658 aa
AA seq
DB search
MNYEKASQRITELKEIINNSNYNYYVLDNPTISDFDYDMYLRELETLEAQFPELITQDSP
THRVGGQSDNTFDKVPHTVQMGSLQDVFSFDELYSFHNRVKEVINPIYVVEPKIDGLSVS
LEYVNGVFTRGSTRGDGFVGEDVTQNLKTIKSIPLKLAEAIPYLEVRGEVYMPRKSFEKV
IQEQIDNDEEPFKNPRNAAAGSLRQKNSKITAKRKLDIFVFNIQQIEGKEITTHSETLDY
LKQLGFKVSPSYPQFNNMDQVIDEVNKIGEKRYEYPFDIDGAVVKVNSLSDRTKLGATAK
YPKWAVAFKYPPEEKETILLNVEINVGRTGALTPTAVFEPVQLAGTTVSRAVLHNQDFID
EKDIRIGDTIIVRKAGDIIPEVLKSVKHQENSIPYKIPEFCPSCGEKTVREGAQAAMRCV
NPKCPSAIYRSIIHFASRNAMNIDGLGPAIVQALIDSDNIKTIADLYYLEKDKLLQMERM
GEKSIDNLLNAIEKSKENQLSKLVFGLGIRNVGQKAAELLCNHFHSIDAVVNAQYNELIM
IEGYGDIIANSILDFFSKQDNLDIIDKLKAAGVNMQQESEIQSDILKGKTFVITGTLPTL
SRNEAKDIIEQNGGKVSSSVSKKTNYVLAGEEAGSKLTKANQLGVTAITQQELLDMLQ
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaactatgaaaaagcaagtcagcgtattacagaattaaaagagattataaataatagt
aattataactattatgttttagataatcccacaataagtgattttgattatgatatgtat
ttgagagagcttgaaacacttgaagctcaatttccggaactcataacgcaagattcacca
acacatcgtgtaggtggtcaatctgataatacatttgacaaagtaccgcatactgttcaa
atgggtagtttgcaagatgtatttagctttgatgaattatatagtttccataatcgagta
aaagaagtcattaatccaatttatgtagtagaacctaaaattgacggattatctgtatca
ttagagtatgttaacggagtatttactcgaggttcaactcgtggtgatggatttgttggg
gaagatgttacacaaaacttgaagacaattaaatcaataccgcttaaattagcagaagcc
attccttatcttgaggtaaggggagaggtttatatgcctagaaaaagttttgaaaaagtt
atccaagaacaaatagataatgatgaagaaccttttaaaaatcctcgaaatgctgccgct
ggatcattacgacaaaaaaacagcaaaataacagctaaacgaaaactggatatcttcgtt
ttcaatatccaacaaattgaaggtaaagagataaccactcatagcgagacattagattat
ttaaagcaattaggatttaaggtatctccatcttatcctcaattcaataacatggatcaa
gttattgatgaagtaaataaaattggagaaaagcgatacgaatacccatttgatattgat
ggtgctgttgtaaaggtaaatagcttgtcagatagaactaagcttggtgctactgctaaa
tatccaaaatgggcagttgcatttaagtatccacctgaagaaaaagaaaccattttatta
aatgtagaaatcaatgtaggccgtacgggcgcattaactccaactgcagtttttgaacca
gtacagcttgcgggaacaacagttagtagagcagtactgcacaatcaagacttcattgac
gaaaaagatatccgtattggcgatacaataatagtaagaaaagccggcgatattatacct
gaagtgttaaaatcagtaaagcatcaagagaatagtattccttataaaatacctgaattc
tgtccgtcttgtggtgaaaaaaccgtaagagaaggtgcacaagctgcaatgcgttgcgta
aacccgaaatgtccttccgctatttacagaagtattattcactttgcttctagaaatgca
atgaatattgatggattaggccctgcaattgttcaagctttaattgattctgataatatt
aaaacaatagctgatttatattatttagagaaagataaattattacagatggaacgtatg
ggtgagaaatcaatagataatttattgaatgctattgaaaaatctaaggaaaatcaatta
tccaaacttgtgttcggtttaggtattcgtaatgttggccagaaagccgcagaattactt
tgtaatcattttcattcgattgatgctgttgtgaatgctcaatacaatgagcttattatg
atagagggatatggcgatataatagccaatagtattcttgatttcttttcaaaacaagat
aatcttgatattattgataagttaaaagctgcaggtgttaacatgcagcaagaaagcgaa
attcaaagtgatatattaaagggaaagacttttgttattacgggtacacttcctactctt
tctcgtaatgaagcaaaagatatcattgaacaaaatggtggtaaggtaagttcaagtgtt
tctaagaaaacaaactacgttctagctggtgaagaagcgggaagtaaattaacgaaagca
aatcaactgggtgttactgcaattacacaacaagagttgttagatatgttacaataa
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