Paracoccus alcaliphilus: JHW40_11730
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Entry
JHW40_11730 CDS
T08960
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palp
Paracoccus alcaliphilus
Pathway
palp03030
DNA replication
palp03410
Base excision repair
palp03420
Nucleotide excision repair
palp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHW40_11730 (ligA)
03410 Base excision repair
JHW40_11730 (ligA)
03420 Nucleotide excision repair
JHW40_11730 (ligA)
03430 Mismatch repair
JHW40_11730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palp03032
]
JHW40_11730 (ligA)
03400 DNA repair and recombination proteins [BR:
palp03400
]
JHW40_11730 (ligA)
Enzymes [BR:
palp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JHW40_11730 (ligA)
DNA replication proteins [BR:
palp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JHW40_11730 (ligA)
DNA repair and recombination proteins [BR:
palp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JHW40_11730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JHW40_11730 (ligA)
MMR (mismatch excision repair)
DNA ligase
JHW40_11730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JHW40_11730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
WCR17059
LinkDB
All DBs
Position
complement(2292918..2295140)
Genome browser
AA seq
740 aa
AA seq
DB search
MARQTGETGDDITPESGVAVQDRSGVDQLNTQQASDEIASLADRIRQANEDYHTHDAPTL
SDADYDAMKRRLEELEQAFPDLVMPDSPTGHVGATPAEGFGKVTHAQRMMSLSNAFTPED
VQDFVTRIRSFLNLAEDAPLMFTAEPKIDGLSLSLRYEDGVLVQAATRGDGSVGENVTAN
ARTVADIPQLLRDAPKGIIEVRGEVYMSHDDFARLNQTGSGRVFANPRNAAAGSLRQLDP
TVTASRPLRFFAYGWGQLSAPLADTQMQAVQRLADLGFAINPLTRLCDGAAAMIETWAAI
EQQRATLGYDIDGVVYKVDDLSFQARLGFRSTTPRWALAHKFPAETAWTRLQRIEIQVGR
TGALSPVARLEPVTVGGVVVSNATLHNEDYIAGRDNSGAPIREGRDIREGDWVKVYRAGD
VIPKIADVDLSRRPADSDAYRFPETCPECGSDAVREVGDSVRRCTGGLICPAQAIEKLKH
FVSRAAFDIEGLGAKQIEMFFTDDHLPIREPADIFTLATRDTANLPKLKNREGFGDRSAA
KLFAAIEDRRRIELRRLIFALGIRHVGEVAAATLARHFGTWDALIAAIDGAAQEPAFAAT
DDKSRRPLLADSPHWSELAGIDGIGAVLVQSLITSFSQPSERAGIDRLTRQLEILPAKAP
THADSEISGQTLVFTGTLERMTRAEAKARAESMGAKVAGSVSAKTDLVIAGPGAGSKAKK
AADLGVRVIDEDEWMRIAGR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgacagacaggcgaaaccggcgatgacatcacgccagaatcgggggttgcggtg
caggaccgcagcggcgtcgatcagctgaatacgcagcaggccagcgacgaaatcgcctcg
ctggccgaccggatccggcaggcgaacgaggattaccacacccacgacgcccctaccctg
tcagatgcggattacgacgcgatgaagcgccgtctggaagaactggaacaggcattcccc
gatctggtcatgcccgacagtccgaccggccatgtcggcgccaccccggcggaagggttc
ggcaaggtcacccatgcgcagcggatgatgtcgctgtccaacgccttcacgcccgaggac
gtgcaggatttcgtcacccgtatccgcagctttctgaaccttgccgaagacgcgccactg
atgttcacggcggaacccaagatcgacggattgtcgctgtcgctgcgctatgaggacggc
gttctggtgcaggcggcgacgcgcggcgatggcagcgtgggcgaaaacgtcaccgccaat
gcccgcaccgtggccgacattccgcaactgctgcgcgacgcgccgaagggcataatcgag
gtgcgcggcgaggtctatatgagccacgacgatttcgcccgtctgaaccagaccggcagc
ggtcgcgtctttgccaatccccgcaatgccgccgccggatcgctgcgccagcttgacccg
acggtcaccgccagcaggccgctgcgctttttcgcctatggctgggggcaactgtccgcg
ccgctggccgatacgcagatgcaggcggtgcagcggctggcggatctgggctttgccatc
aacccgctgacccggctttgcgacggcgccgcagcgatgatcgagacatgggccgcgatc
gagcagcagcgcgccacgcttggctatgacatcgatggcgtggtgtacaaggtggacgac
ctgtcctttcaggcgcggctgggtttccgctcgaccacgccgcgttgggcgctggcgcac
aagttcccggccgagaccgcctggacccggttgcagcggatcgagatccaggtcggtcgc
accggcgcgctgtcccccgtcgcgcggttggagccggtgacggtcggcggcgtcgtcgtc
tcgaacgcgaccctgcataacgaggattacatcgccggccgcgacaattccggcgcgccg
atccgtgaggggcgcgacattcgcgaaggcgactgggtcaaggtctatcgcgcgggcgat
gtgattcccaagattgccgatgtggacctgtcgcgccgcccggcggacagcgatgcatat
cgctttcccgaaacctgtcccgaatgcggctcggacgcggtgcgcgaggtgggcgattcc
gtgcgccgctgcacgggcggcctgatatgcccggcgcaggccattgagaagttgaaacat
ttcgtcagccgcgccgccttcgacatcgagggtctcggggcaaagcagatcgagatgttc
ttcaccgacgatcacctgccgatccgcgaaccggcggatatcttcacgctggccacccgt
gacaccgccaacctccccaagttgaagaatcgcgagggtttcggcgaccgctcggccgcc
aagctgttcgccgccatcgaggatcgccgccggatcgagttgcgccgcctgatctttgcc
ctcggcatccgccatgtgggcgaggtcgcggcggccacactggcgcgccatttcggcaca
tgggacgcgctgatcgccgccatcgacggggccgcgcaggaaccggcctttgccgccacc
gatgacaagtcgcgccgtccgctgctggccgacagtccgcattggtcggaactggccggg
atcgacggtatcggcgcggtgctggtgcaatcgttgatcaccagtttcagccagccttcg
gaacgcgcgggcatcgaccgcctgacccggcagcttgagatcctgcccgccaaggccccg
acccatgccgacagcgaaatcagcggccagacgctggtctttaccggcacgttggagcgg
atgacccgggccgaggccaaggcgcgggccgaatcgatgggggcgaaggtcgcgggctcg
gtcagtgcgaaaaccgatctggtcattgccgggccgggcgcgggatcgaaggcgaaaaag
gccgccgatctgggcgtcagggtgatcgacgaagacgaatggatgcggatcgcgggcaga
tga
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