Paracoccus albus: PAF20_05120
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Entry
PAF20_05120 CDS
T09266
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pals
Paracoccus albus
Pathway
pals03030
DNA replication
pals03410
Base excision repair
pals03420
Nucleotide excision repair
pals03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAF20_05120 (ligA)
03410 Base excision repair
PAF20_05120 (ligA)
03420 Nucleotide excision repair
PAF20_05120 (ligA)
03430 Mismatch repair
PAF20_05120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pals03032
]
PAF20_05120 (ligA)
03400 DNA repair and recombination proteins [BR:
pals03400
]
PAF20_05120 (ligA)
Enzymes [BR:
pals01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAF20_05120 (ligA)
DNA replication proteins [BR:
pals03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAF20_05120 (ligA)
DNA repair and recombination proteins [BR:
pals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAF20_05120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAF20_05120 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAF20_05120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAF20_05120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
WBU61907
LinkDB
All DBs
Position
1032777..1034993
Genome browser
AA seq
738 aa
AA seq
DB search
MEQDQAADRVAALVELLEQANLDYHQKDAPNMSDADYDRAKRALSTLEEAFPELAHPDSP
SNQVGAAPSEAFGKITHAQRMMSLANAFADSEIDEFVSRVRSFLGLKTQDELDFTAEPKI
DGLSLSLRYESGKLVQAATRGDGTVGENVTENAKTISDIPQRLTGNPPEILEVRGEVYMS
HKDFAALNASDGARVFANPRNAAAGSLRQLDPEITRSRPLRFFAYAWGEISEAFAETQFD
AIAKLKAYGFQTNPLTKLCHNAAEMIAQWQAIEEKRSSLGYDIDGVVYKVNDLSLQSRLG
FRSTTPRWAIAHKFPAETAWTRLRDIEIQVGRTGALSPVARLDPVTVGGVTVSNATLHNE
DYIAGINSSGDRIRDTDIRIGDWVKVYRAGDVIPKISDVDEEERSGDETVYRFPETCPEC
GSDAIREPGDAVRRCTGGMICPAQAIEKMKHFVSRGAFDIEGLGAKQVEAFYHDETLPIR
EPADIFTLQARDEAALGKLKNRDGWGETSATNLFDAIEAKRSIPLAKLIYALGIRHVGEG
ASSDLARHFTSWDNLAATLDAAIPAAERHVEADEAVLHERQNAAEQGRRARISATRDAVL
SRAPALSQESKSAFEELMSIDGIGAVVAQSLCATFAQEKERKSIDTLVTQLRVEDAEIAN
TAGSKVAGKTIVFTGTLEKMTRAEAKARAEAMGAKVSGSVSAKTDILVAGPGAGSKATKA
AELGVEVIDEDTWLTLIG
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggatcaggctgctgatcgtgtcgctgcccttgtcgaactgctagagcaggca
aatctcgactatcatcaaaaagacgcgccgaacatgtcggatgccgattatgatcgggcg
aaacgcgcgctttcgacgctggaggaggcctttcccgaactcgcccacccggacagcccc
agcaatcaggtcggtgcagcgccctcagaagcgtttggcaaaatcacccatgcgcagagg
atgatgtcgcttgcgaatgcgtttgccgatagcgaaatcgacgaatttgtaagccgcgtt
cgcagcttcctcggcctgaaaacgcaggatgagctggactttaccgccgaacccaagatc
gacggcctgtcgctgtcgctgcgctatgaatccggaaagctggttcaggcggcgacgcgc
ggtgatggaacggttggcgagaatgtcaccgaaaacgcaaagactatttccgatattccg
cagcggctgaccggcaatccgcccgaaattctggaagtgcgcggcgaagtttacatgtcc
cacaaggatttcgcagcgttgaatgccagtgatggcgcccgagtctttgccaaccccagg
aacgcggcggcgggctcactgcggcaactcgatccggaaatcacccgctctcgaccgctg
cgcttctttgcctatgcctggggagagatcagtgaggcttttgccgaaacccagttcgat
gccatcgcgaaactgaaggcgtatggctttcagacaaacccgctgacaaagctgtgccac
aatgcagcagagatgatcgcgcaatggcaggcgatcgaagaaaagcgatcaagccttggc
tatgacatcgacggggtcgtctacaaggtcaacgacctgtcgctgcaaagccgcctcggc
tttcgatccaccacgccgcgttgggccatcgcgcataaatttccggctgaaaccgcgtgg
acacgtttgcgcgatattgaaattcaggttggcaggactggcgcgctttcgccagtggca
cggcttgatccggtaaccgttggcggggtgaccgtgtccaatgccaccctgcataacgag
gactatatcgccggtatcaactccagcggcgaccggatacgtgatacggatatccgtatc
ggcgactgggtgaaggtctatcgcgccggtgacgtgatcccgaagatttccgatgtcgat
gaggaagagcgcagcggcgatgaaaccgtatatcgttttcctgaaacctgtccggaatgc
ggctcggacgctattcgggaacccggcgacgccgtgcggcgctgcaccggtgggatgatt
tgtccggcgcaggcaattgaaaaaatgaagcattttgtcagccgtggtgcatttgatatc
gaagggttaggcgcaaaacaggtcgaggctttctaccacgacgagactctgccgatccga
gagcctgcagatatcttcaccctccaggcgcgggacgaagcagcgcttggcaagttgaag
aaccgcgacggctggggtgagacttcggccacgaacctgttcgacgcgatcgaggcaaag
cgcagcattccgctggcaaagcttatctacgcgcttggcatccggcatgtcggcgaaggt
gcttcatccgatctggctcggcatttcacaagctgggacaatcttgccgcaacccttgat
gccgccattcccgctgcagaacgccatgtcgaagccgatgaggcggtgctgcatgaaagg
caaaacgcagcagagcaaggccgccgcgcccggatttccgcgacccgcgatgccgtgttg
tcgcgtgcgcctgccttgtcacaggaatcgaagtcggcctttgaagagctgatgtcaatc
gacggaatcggcgcggtggtcgcgcaatcgctttgtgcgaccttcgcgcaggagaaagag
cggaagtcgattgatacacttgtcacgcagttgcgcgtcgaggatgcagaaatcgcgaac
actgccggcagcaaggtcgcaggcaagacaattgtctttaccggaacgctggaaaaaatg
acccgggcagaggcgaaggcgcgggcagaggcgatgggggccaaagtgtcaggctctgtc
tcggcgaagacggatattctggttgcggggcccggcgcgggatcgaaggccacgaaggcc
gccgaattgggcgtcgaggtgattgacgaggatacatggctgacgctgatcggatag
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