Pseudoglutamicibacter albus: CJ193_002650
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Entry
CJ193_002650 CDS
T09091
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palu
Pseudoglutamicibacter albus
Pathway
palu03030
DNA replication
palu03410
Base excision repair
palu03420
Nucleotide excision repair
palu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJ193_002650 (ligA)
03410 Base excision repair
CJ193_002650 (ligA)
03420 Nucleotide excision repair
CJ193_002650 (ligA)
03430 Mismatch repair
CJ193_002650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palu03032
]
CJ193_002650 (ligA)
03400 DNA repair and recombination proteins [BR:
palu03400
]
CJ193_002650 (ligA)
Enzymes [BR:
palu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJ193_002650 (ligA)
DNA replication proteins [BR:
palu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJ193_002650 (ligA)
DNA repair and recombination proteins [BR:
palu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJ193_002650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJ193_002650 (ligA)
MMR (mismatch excision repair)
DNA ligase
CJ193_002650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJ193_002650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HOIP-UBA
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
WIK85189
LinkDB
All DBs
Position
complement(579680..582001)
Genome browser
AA seq
773 aa
AA seq
DB search
MPAGETAAGESVAVESAAVPAHELRVEYADLVDKVRKYRHAYYNENTQLVSDAEFDELFA
RLEELEALHPELVTNDSPTQEVGGEVSAAFSPVKHPSQMYSLEDVFSYEELETWFERART
NSASLAPGVEVKWLTEVKIDGLAVNLIYRDGVLDVAATRGDGTTGEDVTDNVKTIAGIPH
ELKGEGWPAELEVRGEVFIPSKEFEAFNESLIAEGKAPLANPRNAAAGSLRQKDPAQTAK
RPLRMFVHGVGAREGMNVESQHEIYAQLEAWGLPVSPYNKLFDTTDEVFAYIDQIGQDRH
SLVHEIDGMVIKIDDFQAQRALGYTSRTPRWAVAYKYPPEEVHTDLLEIRVQVGRTGRVT
PYGVMRPVTVAGSTVERATLHNRDVVKAKNLLIGDVVVLRKAGDVIPEIVGPVLPLREGR
EDELSEWVMPSECPSCGTPLRPAKESDVDLRCPNSQHCPEQLAQRVEYAASRGGLDIEAL
GAEAAIALTIGPGPDPAENNGVPAPSGPGPLTTERDLFDLADPESELSKSLADVRVWREK
RSKGQGTGVWELRPYFYTRGTSAKPAGPNANTQKLFREVAGAMGKELWRVLVALSIRHVG
PTASRALAQRFGSMDALREAVASENAVEILSDIDGVGTIIAEALVDWFQEDWHVEIVDAW
QQAWRANGYEMADERDEEVAAILEGLTIVVTGSLADFSRDEAKEAILARGGKATGSVSKK
TSVVVAGEAAGSKLTKAQELGIPVLDEDGFKELLEHGLAVLENDAAPEEGGDQ
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ataccggctggcgagactgcggctggcgagtccgtggctgtagagtctgcagctgttccc
gcgcacgagttgcgggtagagtacgcggacctcgtcgataaggtccgtaagtaccggcac
gcgtattacaacgagaacacgcagctggtttccgatgccgagtttgatgagttgtttgct
cggcttgaagagcttgaggctctgcatcctgagctggtgacgaacgattcgccgacccaa
gaggtgggtggcgaggtttcggcggcgttctcgccggttaagcacccgagccagatgtat
tcgctcgaagatgttttcagctacgaagagctggaaacgtggtttgagcgtgcccgcacc
aacagtgcctcgcttgcgcccggggttgaggttaagtggctgaccgaggttaagatcgat
gggctcgcggtgaacctgatttaccgcgatggtgtcctggacgtagcggcaacccgcggc
gacggcacgacgggcgaggacgtcacggataacgtcaaaacgatcgcgggtatcccgcac
gagttgaagggcgaaggctggccggccgagcttgaggtccgcggcgaggttttcatcccg
tcgaaggagtttgaggcgttcaacgagtcgctcattgccgagggcaaagcgcctctcgcg
aatccgcgcaatgccgcggcgggttcgctgcgtcagaaagacccagcacagaccgctaag
cgtccgttgcggatgttcgttcacggcgtgggcgcacgtgaaggtatgaatgttgaatcc
cagcacgagatttacgcccagcttgaggcatggggcctgccggtatccccctataacaag
ctgttcgacaccaccgacgaggtgttcgcctacatcgatcagatcggccaggaccgccac
agcctggtccatgagatcgacggcatggtcatcaagatcgatgacttccaagcgcaacgc
gcactcggctatacctcccgcactcctcgttgggctgtcgcctataaataccctccagaa
gaagtgcacacggaccttctggaaatccgtgtgcaggtcgggcgcaccggccgagtcacg
ccgtatggcgtgatgcgccctgtcacggttgcgggttcgacggttgagcgtgcaaccttg
cacaaccgcgatgtggtcaaggccaagaacctgctcatcggcgacgtcgtggtgctacgt
aaggcaggcgacgtcatccctgagatcgtgggcccggtgcttccgttgcgtgaaggtcgc
gaagacgaactttccgagtgggtcatgccgagcgaatgcccatcgtgtggaacgccgttg
cgtcccgcgaaggaaagcgacgtagatctccgttgccctaacagccaacactgcccggag
cagctggctcagcgtgttgaatacgcggcatcacgcggcgggctcgacatcgaggctctc
ggcgccgaagcggctatcgcgctcacgatcggtccgggacctgacccggccgagaacaac
ggggttccagctccttcgggacctggacctttgacgaccgaacgcgacttgttcgacctt
gctgacccggagtctgagctgtcgaagtcgctcgcggatgtccgcgtgtggcgcgagaag
cgttcgaaaggccaggggaccggcgtgtgggagctgcgcccgtacttctatacgcgtgga
acctcggctaaacccgccggacccaacgcgaatacgcagaagctgttccgcgaggtcgct
ggcgctatgggcaaggagctgtggcgtgtgctcgtcgcgttgtcgatccgccacgtcggc
ccgaccgcatcgcgcgccctagctcagcgcttcggctcgatggacgcgctgcgtgaggcc
gtagcgagcgagaatgctgtcgagatcctttccgatatcgacggcgtgggtaccatcatc
gctgaagcgctcgtggactggttccaggaagactggcacgtcgagatcgtggacgcgtgg
cagcaagcctggcgggccaacggatacgagatggccgacgaacgagacgaagaggttgct
gcgatcctcgaaggcctcacgatcgtcgtgacaggctcccttgcggacttctcccgcgac
gaggcgaaagaagcgatcctcgcccgcggcggcaaagcaacaggttcagtctccaagaag
acgagcgttgtggttgcaggtgaagcggccggatccaagctcacgaaagcccaagagctc
ggcattccagtgctggatgaggacgggttcaaagaactcctcgaacatggcctagccgtg
cttgaaaatgacgcagcaccggaggaaggtggcgaccagtga
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