Pseudomonas alvandae SWRI17: KSS97_09810
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Entry
KSS97_09810 CDS
T07736
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palv
Pseudomonas alvandae SWRI17
Pathway
palv03030
DNA replication
palv03410
Base excision repair
palv03420
Nucleotide excision repair
palv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSS97_09810 (ligA)
03410 Base excision repair
KSS97_09810 (ligA)
03420 Nucleotide excision repair
KSS97_09810 (ligA)
03430 Mismatch repair
KSS97_09810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palv03032
]
KSS97_09810 (ligA)
03400 DNA repair and recombination proteins [BR:
palv03400
]
KSS97_09810 (ligA)
Enzymes [BR:
palv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSS97_09810 (ligA)
DNA replication proteins [BR:
palv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSS97_09810 (ligA)
DNA repair and recombination proteins [BR:
palv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSS97_09810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSS97_09810 (ligA)
MMR (mismatch excision repair)
DNA ligase
KSS97_09810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSS97_09810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
DUF4796_N
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QXI55203
LinkDB
All DBs
Position
2186703..2189060
Genome browser
AA seq
785 aa
AA seq
DB search
MNAVETRILELRAELDQHNYRYHVLDAPSIPDAEYDRLFHELKALEEQYPELVTSDSPTQ
RVGSMALSAFSQVRHEIPMLSLGNAFDETTLREFDRRVTEGLDLPLGDLLGGGAAVEYSC
EPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPVLEVRG
EVYMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSRITANRPLEFCCYGIGQVTS
DIADTHIGNLKQLKAWGMPISRELKLAHGIDECLDYYRDIGERRNSLPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPDDARPVEVPQQCPVCGS
HVERTQLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHGL
EIQDQGELGAEFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANAVREFFAVAANREQALAAEKQLQDFGMHWLSEKKVVEGLPEAGHTWVLTGSLEL
MSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEQAFVDFLKG
HDIPV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgttgaaacccgcatcctagagctgcgcgccgagctggatcagcataactat
cgttaccacgttctcgatgcaccgagcatcccggacgccgaatacgaccgcctgttccac
gaactcaaggccctggaagagcagtacccggaactggtgaccagcgactccccgacccag
cgagtcggcagcatggcgctgtcggcgttcagccaggtgcggcatgagatcccgatgctc
agcctgggcaacgcgttcgacgaaaccaccctgcgtgaattcgatcggcgcgtgacagaa
ggcctcgacctccccctgggcgatttgctcggcggcggtgcggcggtggaatacagttgt
gaaccgaagctcgatggcctggcggtcagcctgttgtatcaggacggcatgctggtgcgc
ggtgccacgcgcggtgacggcaccacgggcgaggacatcagcgtcaacgtgcgcacggtg
cgcaacattcccctcaagctgcagggcagcggttggccgccggtgctggaagtgcgcggc
gaggtatacatgtccaaggccggtttcgagcgcctcaacgccacgcaactggaggtgggc
ggcaagacgttcgccaacccgcgcaacgcagcagccggcagtctgcgccagctcgactcg
agaatcacggccaatcgtccccttgagttctgttgctatggcatcggccaggtgacctcg
gacatcgccgacacccacatcggcaacctcaagcaactcaaggcctggggcatgcccatc
agccgtgagctgaagctggcccacggcatcgacgaatgcctggattactaccgcgacatc
ggcgagcgacgcaattcgctgccctacgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccagcgcgagttgggttttcgtgcccgcgagccgcgctgggccatcgcccat
aaattccccgccagcgaagaactcaccgaattgctcgacgtcgagttccaggtcggccgt
accggtgctgtcacacccgtggcgcggctcaaacccgtcaaggtggctggcgtgacggtg
gccaatgccacgttgcacaacatggacgaagtggcgcgcctgggcctgatgatcggcgac
acggtgatcattcgccgcgccggcgacgtgatcccgcaggtggtgcaagtcgtcaccgag
cgccgtccggacgatgcccgcccggtggaggtgccgcagcagtgtccggtttgcggttcc
catgtcgaacgtacgcagctgatcaagcgcagcaaggggcgtgagaccgtcagcgaaggc
gcggtgtaccgctgcgtcggtcgcctggcctgtggcgcgcaactcaagcaggcgatcatc
catttcgtctcgcggcgggcgatggacatcgaaggcctgggggaaaaaagtgtcgagcag
ttggtggatgaagggctggtggggtcgcctgccgacctgtatgcgctgacgttcgagcaa
gtcgtcgacctggaaggcttcgccgagctatcgagcaagaatttgctggcggccatcgtc
gacagcaagcagccgagcctggcgcgcttcatctacgccctcggcatcccggacgtgggc
gaggagaccgccaaggtcctggcccgctccctcggttcgctggagcgcgtgcaggcggcg
ttgccccaagtgctgacgtacctgccggatgtggggctggaggtcgcccatgagatccac
agcttctttgaggacccgcacaatcgccaggtcatcaaggatctgctgcgccatggcttg
gaaattcaggatcagggcgagttgggcgcggagttctctgccagcacgaccctgggcggc
ttcctcgacaagctgcacattccttcagttggcccgggcggcgcgcagaaactggcggac
aagttcggttccctcgaagcagtcatgaacgccgactggctggacatgcgccaggcgctt
ccggaaaaacaggccaacgccgtgcgcgagttcttcgctgtcgctgccaatcgagagcag
gccttggccgcagagaagcaactgcaggatttcggcatgcactggctgagcgagaaaaag
gttgtcgaaggcttgcccgaagcagggcacacctgggtattgaccggttcgttggagctg
atgagtcgcgacatagccaaggacaagttggagagcctgggggccaaggtggctggttcc
gtgtcggcaaagacccactgcgtggtggccgggccgggggcggggtcgaagttgaccaag
gctaatgagctggggctcaaggtgctcgacgaacaagcgtttgtcgactttctgaagggc
catgacatcccggtctga
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integrated database retrieval system
