Pseudooceanicola algae: PSAL_007370
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Entry
PSAL_007370 CDS
T06943
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
palw
Pseudooceanicola algae
Pathway
palw03030
DNA replication
palw03410
Base excision repair
palw03420
Nucleotide excision repair
palw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
palw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSAL_007370 (ligA)
03410 Base excision repair
PSAL_007370 (ligA)
03420 Nucleotide excision repair
PSAL_007370 (ligA)
03430 Mismatch repair
PSAL_007370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
palw03032
]
PSAL_007370 (ligA)
03400 DNA repair and recombination proteins [BR:
palw03400
]
PSAL_007370 (ligA)
Enzymes [BR:
palw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSAL_007370 (ligA)
DNA replication proteins [BR:
palw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSAL_007370 (ligA)
DNA repair and recombination proteins [BR:
palw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSAL_007370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSAL_007370 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSAL_007370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSAL_007370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QPM89516
UniProt:
A0A418SDT6
LinkDB
All DBs
Position
765923..768376
Genome browser
AA seq
817 aa
AA seq
DB search
MTGGKDEGKRAGEGQDLAPETLSPEQAQAELATLAKTLNAANLAYHREDTPEISDADYDR
LKRRNAALEAQFPDLKRADSPSDQVGAAPADGFGKVRHDIRMLSLSNAFEDGDIAEFDQR
IRRYLNLSDKDPLVFTAEPKIDGLSLSLLYEDGELTRAATRGDGEVGENVTANARMIEDI
PQRIAGAPARMEVRGEVYMSHADFEALNTRQTDAGARTFANPRNAAAGSLRQLDAEVTRH
RPLRFFAYAWGVLSDPLAETQMKAIERLASFGFETNPLTRLCDGPKEMLAQYRLIEERRA
TLGYDIDGVVYKVDDLALQARLGFRATTPRWAIAHKFPAELAWTWLEAIDIQVGRTAALS
PVARLTPVTVGGVVVSNATLHNEDYIAGRDSRGAEIRGGKDIRVGDWVQVYRAGDVIPKI
ADVDMSKRPDNSVPYEFPVTCPECGSDAIREEGDSVRRCAGGLICPAQATEKLKHFVSRA
AFDIEGLGARQVEFLYAMCWISEPADIFTLPGRDQDGDRLTADPAKRLAHGLEDPERRVD
LLTGLAEMLRTAGVPVDDEDPAHVVAAIRHLAQRPLAQIKGWGEKSADNLFAAIEERRRI
PLNRVIFALGIRHVGEVVATDLARHFNTWEALLTALDAARPAQERYLAVEAAEAEERALA
ADEGRRARVKEARDKVWEGAPTLEDSARAAWADLIDIDGIGAKVAVSLVAAFAQPAERGS
INRLAEWLDIRKIATPEASSSPVAGKTLVFTGTLVKMTRPEAKARAEALGAKVSGSVSAK
TDLLIAGPGAGSKARKAADLGVETIDEDGWLNLIADT
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgacgggcggcaaggacgagggcaagcgcgcgggcgagggacaggatctggcgccggaa
actctgtcgcctgaacaggcgcaggcagaactggccacgctggcaaagactctgaacgcc
gcgaatctcgcctaccaccgggaagacacgcccgaaatttccgatgcggactatgatcgg
ctgaagcggcgcaacgcggctctggaggcgcagtttccggatctcaaacgcgcggattcc
cccagcgatcaggtcggcgcggcgcccgccgatggtttcggcaaggtccgccacgacatc
cgtatgctgtcgctgtccaatgcctttgaggatggcgacatcgcggaattcgatcagcgg
atccgccgttacctgaacctgtcggacaaggacccgctggtcttcactgcggaaccgaag
atcgacggccttagcctgtcgctgctttacgaagatggcgaactgacccgcgcggcgacc
cgtggcgatggggaagtgggcgaaaacgtcaccgccaatgcccgcatgatcgaggatatt
ccccagaggatcgccggtgccccggcccggatggaagtgcgcggcgaggtctatatgagc
catgcagatttcgaagcgctcaatacccgccagaccgacgcgggtgcgcgcaccttcgcc
aacccccgtaacgccgcggccggttccctgcgccagttggatgccgaggtcacgcgccac
cgtcccctacgctttttcgcctatgcttggggggtgctgtccgacccactggccgagacc
cagatgaaggcgatcgagcggttggcctctttcgggttcgaaaccaaccctctgactcgg
ctttgcgacgggcctaaggaaatgctggcgcagtatcgcctgatcgaggagcggcgcgcg
accctcggctatgacatcgacggggtcgtctacaaggtggatgatctggccctgcaagcc
cgcctcggttttcgcgccacgacgccccgctgggccatcgcccataaatttcctgccgaa
ctggcctggacctggttggaggcaattgacatccaggtgggccgaacggctgcgctcagt
cccgtggcccggctgacgcccgtcacggtcggtggtgtcgtggtgtccaacgcgaccctg
cataacgaagactacattgccgggcgtgacagccgcggcgccgaaatccgtgggggcaag
gatattcgtgtcggggattgggtgcaggtctatcgcgccggtgacgtgatcccgaagatt
gccgatgtggatatgtcgaaacgtcccgacaactcggtgccctacgaatttccggtgacc
tgtcccgaatgcgggtcggacgcgatccgcgaagaaggtgacagtgtgcgccgctgcgcg
ggcggactgatctgccccgctcaagccacggaaaaactgaaacatttcgtatcccgcgcg
gccttcgatatcgaaggtctgggcgcgcgccaggtcgaattcctgtatgcgatgtgctgg
atatccgagcctgcggacatcttcaccttgccgggccgcgatcaagatggcgaccgcctg
accgccgatccggcaaagcgcctggcccatgggttggaagatcccgagcgccgcgtcgat
ctgctgacgggcctcgccgagatgctgcgcacggccggtgtgcccgtcgatgacgaggac
cccgcccatgtggtcgccgcgatccggcatcttgcgcaaaggccgctcgcgcagatcaag
ggctggggcgaaaaatccgcggacaacctttttgccgcgatcgaggagcgccgtcggatt
ccgctgaaccgggtgatctttgccctcggcatacgtcatgtgggtgaagtcgtggccacc
gatcttgcccggcatttcaatacctgggaggcgctattgaccgctttggatgctgcccgt
ccggcgcaggaacgttatcttgcggtcgaggcagccgaggccgaagagcgcgccctggcc
gctgacgaaggtcgtcgcgcaagggtcaaggaggcccgtgacaaggtctgggagggggcg
ccgacccttgaggacagcgcccgcgcggcctgggcagacctgatcgacatcgacgggatc
ggtgccaaggtcgcggtgtccctggtcgcggccttcgcgcaaccggcggagcgcggctcg
atcaatcggctggccgaatggctcgacatccgcaagatcgcaacacccgaggccagttcc
agcccggtggccggcaagacgttggtcttcaccggcacgctggtcaagatgacccgtccg
gaggccaaggcgcgggccgaggcgcttggcgccaaggtttcgggctcggtttccgccaag
accgatcttctgatcgccggtccgggcgcgggatccaaggccaggaaggccgcggatctt
ggcgtggaaaccatcgacgaagacggctggctgaacttgatcgcagacacatga
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