Populus alba (white poplar): 118034302
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Entry
118034302 CDS
T07314
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
palz
Populus alba (white poplar)
Pathway
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118034302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
palz03041
]
118034302
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118034302
Complex C
U5 SnRNP specific factors
118034302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Dynamin_N
TsaE
Septin
EF-G_D2
cobW
Motif
Other DBs
NCBI-GeneID:
118034302
NCBI-ProteinID:
XP_034895437
LinkDB
All DBs
Position
18:13140109..13145436
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AA seq
989 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIESDRESDGDEEDEELPDKPHEDEEESDGEEAVHASNGWLTAPD
DVDMDNQVVLAEDKKYYPTAEEVYGPGVETLVNDEDEQPLEQPIIKPVRNIKFEVGVKDS
STYVSSQFLVGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHTPTFDINSEKHIRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLV
VDAAEGVMVNTERAIRHAIQEQLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
ISAVSSTAGNVQVIDPAAGNVCFAGATAGWSFTLHSFARLYLKLHGIPFDADKFASRLWG
DMYYNPEDRTFKKKPPASGAERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAEFGVTLPN
SAYKLNVRPLLRLACSQVFGSASGFTDMLVKHIPSAKVAAARKVDHTYTGPKDSMIYQAM
LDCDPAGPLMVNVTKLYPKSDCSSFDAFGRVYSGKIMTGQSVKVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRLPISMAPPGSWVLIEGVDASIMKTATLCNVNYNEEDIYIFRPLQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLEKGLAEDIENGI
VSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCLTAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSINKFFDEAMVVELAQQAADIHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaatttgtatgatgagtttgggaactacattggtccggaaatagagtcggac
cgagagagcgatggtgatgaagaagatgaagaacttccagacaagcctcatgaagacgag
gaggaatctgacggtgaagaggctgttcatgcttccaatggttggcttactgcccctgat
gatgttgatatggataaccaagttgtccttgccgaggacaagaagtactacccaactgcg
gaggaggtttatggtccaggtgttgaaacgttggttaacgatgaagatgagcagcctctt
gagcaaccgataattaagcctgttaggaacatcaagtttgaggttggggttaaggattcc
tcaacttatgtttccagccagtttcttgttggtcttatgtcaaatccctctttggtacgc
aacgttgcccttgtgggccatctacaacatgggaagacagtttttatggacatgttggtt
gagcaaacacatcatacgccaacttttgatataaatagcgagaagcatattaggtacaca
gatacaaggattgatgagcaagaaagaaggatatctatcaaggcagttccaatgtcactt
gtccttgaggatagcaattcaaagtcatacctctgtaacatcatggacacccctggtcat
gtgaacttctctgatgaaatgactgctgccctcaggcttgctgatggtgctgtgttggtt
gtggatgctgctgaaggagtgatggtaaacacagagagggccatacgccacgcaattcag
gaacagctgcctattgttgttgttattaataaggttgacaggctcataacagagctcaaa
ttgcccccaaaggatgcgtatcacaagctaaggcataccatagaagttattaacaaccat
atatctgctgtctcttcgactgctggaaatgttcaagtgatagatccagctgctggaaat
gtttgttttgctggtgcaaccgcaggatggtccttcactttgcattcctttgctagattg
tatctcaaactccatggtatcccatttgatgctgataagtttgcatctcgtctctggggg
gatatgtattataatcctgaggaccgaactttcaagaagaaacctcctgctagtggagca
gaaagatcatttgtccaatttgtgctggaacctctctacaaaatatacagccaagtgatt
ggagaacataaaaaaagtgttgaggctactcttgctgagtttggtgttactcttcctaat
tcagcttataaattaaatgtcaggcctttgctaagactggcttgcagtcaggtttttggc
tcagcctcaggtttcactgatatgcttgttaagcatataccttcggctaaggttgctgct
gctaggaaggttgatcatacatatactgggcccaaagattcaatgatttaccaggccatg
ctagactgtgatcctgctggccccttaatggttaatgtgacgaaattgtatccaaagtca
gattgcagttcatttgatgcttttggtagggtttatagtggtaaaattatgacagggcag
tctgtaaaagttttgggagaaggctattcaccagaggacgaggaggacatgacagtaaaa
gaagtgacaaaactatgggtatatcaagctcggtataggttacccataagtatggcacct
cctggttcctgggttctcattgaaggtgtggatgcttcaattatgaaaactgctactctc
tgtaatgtgaattataatgaagaagatatatacatatttcgacctcttcagttcaatact
cttccagtagtgaaaactgctaccgagcctctaaatccaagtgagttgcccaaaatggtg
gagggtcttaggaagatcagtaaaagctatcctctggccataactaaagttgaggagtct
ggggagcacactatacttggtactggagagttgtacttagattctattatgaaggacctt
agggagctgtattctgaagtggaagtcaaggtagccgatcctgttgtctcattctgtgaa
actgtggtggagtcctcgtcaatgaaatgctttgctgaaacacccaacaagaagaataaa
ataaccatgatcgctgagccattggagaaagggcttgcagaagacattgagaatggtatt
gtaagcattgactggaatcggaaagctctgggtgacttcttcaagacaaaatatgattgg
gatttgcttgcagcacgatccatatgggcttttggccctgacaagcagggacctaacatt
ttgctagatgacacacttccaactgaagtggacaagggattactaggtgctgtgaaggat
tctatcgttcaagggtttcagtggggtgcacgagaaggaccactttgtgatgaaccaatc
agaaatgttaagttcaagatagttgatgctaggattgcgcctgaaccacttcatcgtgga
tctggtcaaataataccaacagctcggcgtgtggcctactcggcttttcttatggcaacc
ccaaggctcatggaacctgtatattatgtggagatacaaacaccaattgactgtctcact
gcaatttatacggtgttatctcgcagacgtgggcatgttacagcagatgttcctcagcct
gggactccagcttatattgttaaggcatttttacctgtcatagaatcatttggttttgag
acggacttgaggtaccatacccaaggtcaagcatttagcctctcggtgtttgatcattgg
gctatagtccctggagatccccttgataagagcattgttctgaggccacttgagcctgca
ccaatccagcaccttgcccgtgaatttatggtgaagacaaggcgtcgcaagggaatgagt
gaagatgtgagcattaacaagttcttcgatgaggctatggtggttgagctggctcagcaa
gcagctgatattcatcaacaaatgatgtga
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