Populus alba (white poplar): 118039547
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Entry
118039547 CDS
T07314
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
palz
Populus alba (white poplar)
Pathway
palz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118039547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
palz03400
]
118039547
Enzymes [BR:
palz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118039547
DNA repair and recombination proteins [BR:
palz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118039547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
118039547
NCBI-ProteinID:
XP_034902163
LinkDB
All DBs
Position
18:complement(14817926..14829391)
Genome browser
AA seq
1252 aa
AA seq
DB search
MASSSSSSSTEHTKFSILVSLFNWISKTKTSSRKRSKFRKFIDTFCSPSDYFSAVRLILP
NLDRERGTYGLKESVLAVSLIEALGMSRDSPDALKLINWRKGGANATGANAGNFSLVAAE
VLQRRQGTVSGGLTIEELNGLLDKLASSENRGEKTAVLAALINKTNTQEMKWIIMIILKD
LKLGMSEKSVFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMR
VSDAHAAWKKLHGKEVVVECKFDGDRIQIHKNGVEVHYFSRNFLDHSEYAHGMSDIIVQN
VLDERCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSV
IHQTLKERHELLRKVVKPVKGCLEILVPNGGLNAHRLPGEPYCSLIAYNVDDIEKFFKET
IENRDEGIILKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQ
FLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPPSFYQV
TNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECLD
VQSFVELVHSSNGTTQKGKGYGDVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKG
ETLIFSNMMFYFVNVPPSNSLESLHKMVAENGGTFSMNLNNSVTHCIAAESKGIKYQAAK
LHGDIIHYSWVLDCCLQKKLLPLQPKCFLFLSDGSKKKLHEEIDEFSDSYYWDLDLSDIK
QLLSNINASEDAKAIDDFKQKYCPEEKWSLFHGCCVYFHISRESLTPDWESLLGLAFRRL
KLEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTIAEKHFLLNKRLYVIGSQW
LEDSLERGQKLLEDTYNLKPSGLEESNCKEVVCDLDMEEATPILDGAENERLPSVTDSEA
KEKRSKAALKDSNKLVSREKETTRKRGRPAGGSTKKGNIGAGQARRTRARIVNKPAKISV
EKSDESCSHDDMSDGNDEIHGGEPAGGITKKRKMGAGLARRTRACTVNKPAKISEEKPDE
SCSHDDKNEENEMSEGNEEIHGPVSKYNLDIQQTKTVEDSESSWRGKAKEETAEENRHEE
WLDKAPDVEMSERYYDKVSEKPEKLEVMVDPVHAILMDMIPSLGMKKGETTNPTFDNEKQ
AEGPHAQSGPSMKKVENTTPILDTEKPAENPSLLPVKKKVSYKDLAAKLLLN
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcttcctcttcgtcgtcaactgagcacacgaagttctccatcttagtgagt
ctcttcaactggatttcaaagaccaaaacttcctccagaaaacgctccaaattccgcaaa
ttcatcgacactttctgctctccgtccgattacttctccgccgtccgcttgatcctacct
aacctcgaccgcgaacgcggcacttacggtctcaaagaatctgtcctcgccgtttccctc
attgaagcactcggcatgtccagggattcccctgatgccttgaagttgattaattggcgt
aaaggtggcgccaacgctaccggtgccaatgctggcaatttctctctcgttgctgccgaa
gtgttgcagcggaggcagggaacggtgtcgggtgggttgacgattgaggagctgaatggt
ttgcttgataaattggcatccagtgaaaataggggtgagaaaactgcagtacttgctgct
ttgataaacaagacaaatacacaggaaatgaagtggattattatgattattcttaaagat
ttgaagttggggatgagtgaaaagagtgtatttcatgaatttcacccagatgcggaagac
ttgtttaatgttacatgtgacttgaaattggtttgtgaaaagctgagggatcgaaatcaa
aggcataaacgtcaggatattgaagttggaaaagcagtgcgccctcaactagcaatgaga
gttagtgatgcacatgctgcatggaaaaagttgcatgggaaggaagtggtggtggaatgt
aaatttgatggtgatcgcatccaaatacataagaatggtgtggaagtacactatttctca
aggaactttctagatcactctgaatatgctcatggaatgtcggacattattgtacaaaat
gttttggatgagaggtgtattcttgatggtgaaatgctggtctgggatacatctttgaat
cggtttgcagagtttggttcaaatcaagaaatagcaaaggctgcaagggatgggcttgat
agtgatagacagttatgctatgttgcatttgatattctttatgttggagatacaagtgtg
attcaccaaaccttgaaggaaaggcatgagctgctccgtaaagttgtcaagccagtgaag
ggttgtttagagatcttagtacctaatgggggtcttaatgctcatcgtcttcctggggaa
ccttattgttcgcttattgcatataacgtggatgacattgagaagttttttaaggaaacc
attgaaaacagggatgaaggtattatattaaaagaccttggttccaaatgggaaccaagt
gatcggagtggaaagtggttgaaactgaagcctgagtacattcgtgctggttctgactta
gatgttcttatcatagggggatactatggttctggacgtcgtggaggagaggtggctcaa
ttcttgttgggtctagcagagcgtcctgcttctaatacatatcccaggcgatttatctcc
ttttgcagagtgggcaatgggctgtcagatgaggagctggatactgttgtctccaaacta
aagccttattttaggaagaatgaatacccaaagaactcaccaccaagtttttatcaagtt
acaaataattcaaaagagagaccagatgtgtggattgaaaaccctgacaaatcaattata
ctttccattactagtgatattcggactataagttctgaggtgttttctgccccatatagc
ttgagatttccgcgtattgacagagtgagatatgacaagccttggcatgaatgtcttgat
gtgcagtcatttgtagagctagtacattcaagtaatggtaccacacaaaaaggaaaaggg
tacggagatgtgcaagatagcaaaccgacacatataaaatcgtctaggaaaggagagaaa
aagagcgtgtctgttgttccatctcatttaattcagactgatatttctgacatcaagggg
gaaactttgatattttcaaatatgatgttttactttgtcaatgtgcctccatctaattct
ctcgaatccttgcacaaaatggttgctgagaatgggggaactttctcaatgaatttaaat
aactcagtcacccattgtatagctgctgaaagcaaagggattaaatatcaagcagcaaag
cttcacggagatattatccattattcatgggtcttggattgctgtttgcaaaagaagctc
cttccattgcagccaaagtgcttccttttcctgtctgatggttcaaagaagaagttacac
gaagaaattgatgaattttctgattcttactactgggaccttgatctttcagacatcaaa
cagcttttgagcaacataaatgcatcagaagatgccaaagccatagacgacttcaagcaa
aagtactgtccagaggaaaaatggtctctgtttcatggctgctgtgtatattttcacatt
tcaagagagtctttaacacccgactgggaatccttgttaggacttgcatttaggaggttg
aaacttgaaattttcatgggtggtggcaaagtcagcaataatattgcgcatgccactcat
ttggtggtcctgattgtaccagcatctgatgtggattttggttcccttgtgaaaagtttc
acaattgcagagaaacattttctcctgaataagaggttgtatgtgattggatctcaatgg
ttggaggactctttggagagggggcaaaagttgctagaggatacatataacttgaaaccc
tctggtttggaagagtcaaactgcaaagaagttgtatgtgacctagatatggaagaagca
actcccattttagatggtgcagaaaatgagagattgccgtcagttactgatagtgaagcc
aaggagaaaagaagcaaagctgctttaaaagattcaaataaactggtctcccgtgaaaag
gagacaacgaggaaaagagggaggcctgctggtgggagcacaaaaaaaggaaacataggt
gctggccaagcacgaagaacacgggcacgaattgtaaacaagcctgctaaaatatccgta
gaaaaatcagacgaaagctgttctcatgatgatatgagtgatggaaatgatgaaattcat
ggaggggagcctgctggtgggataacaaagaaacgaaaaatgggtgctggcctagctcga
agaacacgtgcatgcaccgtaaacaagcctgctaaaatatctgaagaaaaaccagatgaa
agctgttctcatgatgataaaaatgaagaaaacgaaatgagtgaaggaaatgaagaaatt
catgggccagttagcaagtacaatttggatatccaacaaactaaaacggtagaagattca
gaatcatcgtggagaggtaaagcaaaggaggagactgctgaagagaacagacatgaagag
tggttagataaagctcctgatgttgaaatgagcgaaaggtattatgacaaggtgtctgag
aagcctgagaaactagaagtcatggtcgatccagttcatgccatcttaatggacatgatt
ccaagccttggtatgaagaagggggagaccacaaatccaacatttgacaatgaaaagcaa
gctgaaggtccccatgcacagtcaggccccagtatgaagaaggtggaaaatacaactcca
atcctagataccgaaaagccagctgaaaatcccagtttactgccagtgaagaagaaagtc
agctacaaagatcttgctgccaaactgctcctgaattag
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