Populus alba (white poplar): 118050311
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Entry
118050311 CDS
T07314
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
palz
Populus alba (white poplar)
Pathway
palz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118050311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118050311
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118050311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_15th
Ig_NUP210_9th
Motif
Other DBs
NCBI-GeneID:
118050311
NCBI-ProteinID:
XP_034916525
LinkDB
All DBs
Position
16:complement(3971390..3991947)
Genome browser
AA seq
1949 aa
AA seq
DB search
MKVLRFAAFLVAFTTLIVVGKTTSHLSPGPHVTDVNILLPPKMTRPVEYRLQGSDGCFKW
SWDHHDILSVIPEYNLSYSHCSTSARLRSIAPFTGRKETAIYAADVHTGTVIRCKVFIDN
ISRIQIFHNSIKLDLDGLATLRARAFDREDNVFSSLAGLQFMWQLMPETDGLPHHLVHVP
LRDSPLSDCGGLCGDLNIQIELEDSGVFSDLYVVKGVEIGHENVSVHLLEPQFKHLADKI
VLTVAEAMSLEPPSPVLVLIGAAFRYTLKVIRGNILQVVALPSPHHRWSVLNSSVAEVDH
LSGFAQALSLGVTSVIVEDTRVAGHMQVSSLNVVLPDTLCLYIMPLPVSGDPVDGLKAIP
SLARWFVVSGRQYIIQMKVFLGGPDAQEIYITESDDLKLHHEQSEYWTISMLSEDIVVKH
GWRNSRILRAISLGQGKLTASLTYFSGHRERKKVLNAAQEIMVCDQVKFSLDGASGTHQT
ILLPWTPTIYQEVELKATGGCAKTSSDYKWFSSDTSTVSISPFGVLQAKKPGKVTVRVVS
IFDSSNHDEVVIEVSVPSSMIMLQNFPVETVVRSHLPAAVTMKASDGSYYYRCDAFHLFV
KWKVGSESFVIVNATEEALIAEKLGAFHLYESVYGPPCSWAYIYASSPGQTMLQATLSKE
HHLDQSFHGSIILKASSRIAAYPPLTVHQVVDGSQFGGYWLDLGHVEASNHLEPLENLYL
VPGTSLDIMLLGGPAPWDKDVDYLENVEISGDKHASSKDRIHARQISGSYQSMYRVSCQT
LGIFDLVFKRGNLVGDDHSLPAIAEVALSLTCSFPSSIALIIDEPVNRHDAIRFASLADR
STGQIRTTPVTVANGQTIRVAAVGIGASGEAFANSSSLSLRWELSSCEGLAYWWADAYES
QRSKSSWERFLVLQNESGQCVVRATVIGLDDALGSHYSALLRSLENVLTDAVKLQLVSSL
RVNPEFNLLYFNPDAKVNLSIAGGSCLWEAVVNDSQVVEVAQPPPGLQCFQLTLLPKMLG
TALVSISDIGLIPPTSASAVVQVADVDWIKIVSGEQISLMEGQSQPIHLMAGIKDGNAFD
SHQYAYMKIHVRIEDPIVELVDKNAMPSDAGGYVNAPNFTISAKDLGFTTLYVSVRQQSG
HEILSQSIKIEVYAPLRIHPDDIFLVPGACYMLAMKGGPTVGVYIQYASMDDGIATVDKS
SGRLCAISPGNTTILSSVFGNGGVVVCQAHGSIYVGVPSLSMLNAQSDKLDVGREMPIYP
SFPEGDLFSFYELCRSYKWTIEDEKVLSFKMAESSNVEKHWFPLDDEQELDFIKVLHGRS
AGKANITVTFSCDFVSASFSQSRLYDASLSLLVVPPLPLALGVPMTWLLPPHYVTSSLLP
SSLESHGQQDAQSRRGTIIYSLLSCXKRMKFGKKNAISIDGDRIKTTESNNLACIQAKDR
TTGRTEIASCVKVAEVAQIRIMNRDPPFHVIYLAIGANLDLPISYFDASGNPFYEAYDVT
SYRAETNYHEIVSVVITRNGNGTIHLKAMQTGRALVRVSMNSNTQKFDYILVSVGAHIYP
QNPVLQHGSSLNLSVIGINDQVSGFWHSADERVVSVDTRSGEIEACGIGSTHVFFECPSM
KLQTEITVLSGNIVSIHAPKEILTNIPYPAKGYSFPLSLSDTYNKLETLGNGKGVSYDCK
VDPPFVGYAKPWMDLESGNSYCLFFPYSPEHLVHSVPRLKDMRPYVSISINVSLREASHV
SGSASAIFIGGFSILEMDKSSMQLNLTPDSNKTTITILGNTDVEIHWLDRDSMKIALVHK
EDFGIGGRAKYEVQVLRAKRLKDRITITLPANGQRMEIHVTYEPDAKTGAKTSFATFIGL
LVAGCVILCVIYLGCSLLISEISSGHVPSTTPATPPSAAPQTPARGSPALTEQSPRTPQP
FVDYVRKTIDETPYYKRDVRRRSHPQNTY
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgctgcgttttgctgcgtttttggtggctttcactactctcattgtcgtcggc
aaaacgacgtcacatttgagccccggacctcacgtcaccgatgtcaatattctgttgcct
cctaaaatgacgcgtcccgtcgagtatcgcctccaaggaagtgatggctgctttaaatgg
tcatgggatcatcacgatattctatcagttatacctgagtataatttaagctacagccac
tgttcaaccagtgcacggttgagatcaattgctccctttaccggtcggaaggagacagct
atttatgctgctgatgtacacactggcactgtgattcgctgcaaggtctttattgacaat
atttccagaatccagatatttcacaattctattaaacttgatttagatggtcttgctact
ctccgagctcgcgccttcgatcgtgaagataatgtgttttcgtcattagctggattacaa
ttcatgtggcagctgatgcctgaaacggatggattgccgcaccaccttgtccatgttcct
ctcagggattctccgctcagtgattgtggtggtttatgtggtgatttgaacatccaaata
gaacttgaagatagtggtgtattctcggatttgtatgttgtgaaaggagtcgaaattggc
catgagaatgtttccgtgcatttgcttgagccacaatttaagcacttggctgataagatt
gttctaactgtggcagaagccatgtcacttgaacctccctcacctgttttggtcctcatt
ggtgctgcctttcgatatacactcaaagtcattcgtgggaatattctgcaagtggttgct
cttccatctccacatcataggtggtctgttttgaactcttcggttgctgaagtggaccac
ttgtcaggctttgctcaggcactgagcttaggggtaacatctgtcattgtcgaagatact
agagttgctggccatatgcaagtttcatcacttaatgtggttctacctgacactttgtgc
ttatatataatgcccttgcctgtttctggtgatcctgttgatggattgaaagccattcca
tccttggcacgttggtttgttgtttctggtcgtcaatatattattcaaatgaaggttttc
ttggggggacctgatgcgcaagaaatctatattacagagagtgatgaccttaagttgcac
catgagcagtctgaatactggacaatttccatgttatcagaggatattgtggtcaaacat
ggctggcgaaattccagaattctgagagcaatttcccttggtcaaggaaaactaacagct
tctttaacttattttagtgggcaccgggagagaaaaaaggttcttaatgctgcgcaagaa
attatggtatgtgatcaagtgaagttcagtttggatggagcaagtggtacacatcagact
attcttcttccctggacccctactatttaccaggaggtggagctaaaggcaacaggaggc
tgtgcaaaaacatccagtgattataaatggttttcttcagacacgtctactgtgtcaata
tctccatttggggtacttcaggcaaaaaagcctggtaaagtgactgtcagagtagtgtcc
atttttgattcttctaatcatgacgaggtggtcattgaggtttctgtaccatcatctatg
attatgcttcaaaacttccctgtagagactgttgtaagatcacatctgccagctgccgta
acaatgaaagcatcagatggttcctattattatagatgtgatgcctttcatctattcgta
aaatggaaagttggaagcgagtctttcgtcattgtcaatgcaacagaggaggcacttatt
gccgaaaaactgggggcttttcacctctatgaatcagtttatggtccaccatgttcatgg
gcctatatatatgcttccagtcctgggcagaccatgctgcaggcaacattgtcgaaagaa
catcacttggatcaatcgtttcatgggtccattattttgaaggcatcatcacgtattgca
gcatatccaccacttacagtgcatcaggtagtagatggaagccaatttggtgggtattgg
cttgatttgggtcatgttgaagcaagcaatcacctggagcctttggagaacttgtatctt
gtccctggaacaagtttagatatcatgcttcttggtggaccagcaccatgggacaaagat
gttgactatcttgaaaatgtggaaatatcgggtgacaagcatgcttccagtaaagataga
attcatgcacgtcagatttctggcagctatcagagtatgtacagagtttcatgccaaact
ctggggatatttgatttagttttcaaacgcgggaatttggttggagatgaccactctctg
cctgcaatagcagaagttgctttgtctcttacatgcagctttccatcttcaattgcactt
atcattgatgaacccgttaacagacatgatgccataaggtttgcatctcttgctgatcga
agcacagggcaaatccgcaccacccctgttactgtggcaaatgggcaaactattagggtg
gctgcagttggcataggtgcttccggagaagcttttgcaaactcatcttctctttctctg
aggtgggagttgagcagctgtgaaggactggcatattggtgggctgatgcttatgagtcg
cagagatcgaaatccagctgggagaggttcttagtcttgcaaaatgaatcaggacaatgt
gttgttcgtgccactgttattggtcttgatgatgccctcggtagtcattattcagctctg
ttgcgaagtctagagaatgttcttacagatgctgtaaagttgcagcttgtttcttctttg
agagtgaatccagagttcaacttgttgtatttcaatcccgatgctaaggtaaatctttca
attgctggagggagctgtttatgggaagctgttgtgaatgattctcaagtggtagaagtt
gctcagcccccaccaggcttacaatgctttcagttgacgctccttcctaaaatgttgggg
actgcacttgtgtcaatatctgatattgggcttattcctcctacttcagcttctgctgtg
gttcaagtggctgatgtggactggattaaaatagtatcaggagaacaaataagtctcatg
gaaggacagtcacagcccatacatttaatggctgggattaaggatgggaatgcttttgac
tctcatcagtatgcgtacatgaaaattcatgtgcgcattgaggatcctatagttgaactt
gttgacaagaatgctatgcctagtgatgccggtggatatgttaatgctccaaactttacg
atcagtgctaaagatcttggattcacaacactttatgttagtgttagacagcaatctgga
catgaaatattgagtcaatcaataaagatagaagtatatgcgccactgagaattcatcca
gatgatattttcctggtaccaggtgcttgttacatgcttgctatgaaagggggcccaaca
gttggcgtatatatccagtatgcttcaatggatgatggaatagcaacagtggacaaatct
tcaggacgactttgtgcaatttctcctggaaacactacaatcctttcctcggtgtttggg
aatggaggtgttgtggtatgtcaagcacatggtagcatttatgttggagttccttctttg
tcaatgttgaatgcacaaagtgataagcttgatgttggccgtgagatgccgatatatcca
tcatttcctgagggtgatttgttttcattttatgagctctgcagaagttacaagtggacc
atagaggatgaaaaggtgttgagtttcaaaatggcagaaagctcaaatgttgaaaagcac
tggttcccgttggatgatgagcaggaacttgattttattaaagtcttgcatggaagatct
gcaggcaaggcaaatatcacagttacattctcttgtgatttcgtttccgcttcgttctca
cagtcgcggctatatgatgcttctttatcactattggttgtgcctcctctccctcttgct
cttggagttccaatgacatggcttcttcctcctcattatgttacatctagccttttgcct
tcatctttggaatcgcatggtcaacaagatgctcagagtcgtagaggaacaattatctat
tcgttattaagttgtnngaaaagaatgaagtttggaaaaaaaaatgcaatttctatagat
ggagatagaataaaaacaaccgagagtaacaatcttgcatgcatacaagccaaagatcga
accactggaagaactgagattgcatcttgtgtcaaggttgctgaggtggctcaaataaga
ataatgaatagggacccccctttccatgtaatttatcttgctattggtgccaaccttgat
cttccaataagctattttgatgcttcagggaatcccttttatgaagcatatgatgtcact
tcctatcgtgctgaaaccaactatcatgaaattgtctctgttgtaattacaagaaatggc
aatgggactatccatctgaaggcaatgcaaactggtagagctctggtgcgagtatcaatg
aacagtaatacacaaaagtttgactatatactggtttcagttggtgctcacatatatccc
caaaaccctgtccttcaacacgggagttctcttaacctcagtgtaataggcattaatgat
caagtttctggcttctggcatagtgctgatgaaagagttgtttctgtagacacgcgatct
ggagaaattgaagcatgtggaataggttcaacccatgtatttttcgaatgtccaagcatg
aaattgcaaacagaaattacagtgctatcaggaaatattgtttctattcatgccccaaaa
gagatcctaacaaacattccttacccagcaaaaggatatagcttccctttgagcttaagt
gatacttacaacaagcttgaaactctcggaaacggtaagggagtatcatatgactgcaag
gttgatcctccttttgtggggtatgcaaagccatggatggatcttgaatctgggaattcc
tattgcctgttcttcccatattcaccagagcacttggtgcattctgtacccaggttgaag
gacatgagaccgtatgtatctatttctataaacgtatcactcagagaagctagccatgtc
tctggatctgcatcagcaatttttattggagggttttcaatactggaaatggacaagagt
tcaatgcaactgaacctgacaccagattccaacaagactactataaccatcttgggaaat
acagatgttgaaatccactggcttgatcgggattcaatgaagatcgctctcgtccacaag
gaagatttcgggataggtggccgtgcaaaatatgaggtccaagtgctgagagccaaaaga
ttgaaagatagaatcaccatcactctcccagccaatgggcagagaatggaaatacacgtt
acatatgaacctgatgcaaaaacgggggcaaaaactagctttgcaaccttcattgggctt
ctagtagctggatgtgtgatcctttgtgtaatttatctaggctgttccttgcttatctct
gagatatccagcggacatgtgccctccaccacccctgccactccacctagcgcagcacca
cagacacctgctcgcggcagtcctgccttgactgaacagtcgcctcgaacacctcagcca
tttgtagattatgtaaggaagacaatagatgaaactccctactacaagcgagatgttagg
aggaggtctcatccacagaatacttactag
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