Populus alba (white poplar): 118052823
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Entry
118052823 CDS
T07314
Name
(RefSeq) ABC transporter I family member 19 isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118052823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118052823
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118052823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
AAA_15
SMC_N
AAA_23
nSTAND3
AAA_24
AAA
AAA_28
NACHT
AAA_22
Zeta_toxin
SRP54
AAA_25
AAA_30
AAA_5
PduV-EutP
G-alpha
ATP-synt_ab
AAA_33
AAA_7
AAA_14
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
118052823
NCBI-ProteinID:
XP_034919792
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Position
2:complement(2538664..2541708)
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AA seq
300 aa
AA seq
DB search
MAEKASQSIEKEGGENEKANSISICGMQFAYAGQHPLFYDFNLNISPGSRCLLVGANGSG
KTTLLKIMAGKHMVGGKDVVRVINGSAFHDTQLVCSGDLAYLGGSWSKTVGSAGEIPLQG
DFSAEHMIFGVEGTDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLL
DEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEK
LTEVRELKTSANLLSVVESWLRYETKSEKKKPTNPPAQNQKTSPLGSSPFMSSRHMAYYR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaagcttctcaatcaatagaaaaagaaggaggagaaaatgagaaggcaaac
agtatcagtatatgcggaatgcaattcgcatacgcaggacagcatccactcttctacgat
ttcaatctcaacatctctcccggatctcgttgccttctcgtcggcgctaacggatctggg
aagaccactttgctgaaaataatggcagggaagcatatggtaggagggaaagatgtggtg
cgggttataaatggttcggcttttcatgatacgcaattggtttgtagtggtgacttggct
tatttaggaggttcttggagtaaaactgttggatctgctggagagattccactacaggga
gacttctctgcggaacatatgatatttggagttgaagggactgatcctgttagaagagaa
aagttgattgacctgcttgacattgatctgcaatggcgaatgcacaaggtatctgatggg
cagcggcgaagagtccagatttgcatgggtcttctccatccatttaaggttcttttactt
gatgaagttacagtcgatctagatgttgttgccaggatggatttgcttgagttcttcaag
gaagagtgtgatcagagaggagctacaattgtatatgctactcatatttttgatgggtta
gagacttgggcaactcatctagcttacatacaagacggtgagctgaggagggctgagaag
ctaacggaggttcgtgagttgaaaacctcagccaatctgctttctgttgttgagtcttgg
ctccgctatgaaaccaagagtgagaaaaagaaacccaccaaccctcctgcccaaaatcaa
aagacctctcctcttggtagttctcctttcatgtcatctagacacatggcatactaccgt
tga
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