Populus alba (white poplar): 118062236
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Entry
118062236 CDS
T07314
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
palz
Populus alba (white poplar)
Pathway
palz03018
RNA degradation
palz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
palz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118062236
09123 Folding, sorting and degradation
03018 RNA degradation
118062236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
palz03019
]
118062236
03041 Spliceosome [BR:
palz03041
]
118062236
Messenger RNA biogenesis [BR:
palz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118062236
mRNA degradation factors
5'-3' decay
Lsm complex
118062236
Spliceosome [BR:
palz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118062236
Complex C
U2 snRNP components
118062236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
118062236
NCBI-ProteinID:
XP_034931863
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All DBs
Position
5:complement(18394326..18396513)
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AA seq
97 aa
AA seq
DB search
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgaagaagagagtgcggtaaaagaaccattggatctcatcagacttagcctg
gacgagcgtatctacgtcaagctccgctctgatcgtgagcttcgcggcaaacttcacgct
tatgatcagcatttgaatatgattcttggggatgttgaagaaattgttactacagtagaa
atcgatgatgaaacctatgaagagattgttcggactacaaggcgcacagtgcccttcctg
tttgttagaggagatggtgtcatattggtctctcctccattgaggacagcttaa
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