Pantoea ananatis LMG 20103: PANA_2759
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Entry
PANA_2759 CDS
T01195
Symbol
ligA
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03030
DNA replication
pam03410
Base excision repair
pam03420
Nucleotide excision repair
pam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PANA_2759 (ligA)
03410 Base excision repair
PANA_2759 (ligA)
03420 Nucleotide excision repair
PANA_2759 (ligA)
03430 Mismatch repair
PANA_2759 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pam03032
]
PANA_2759 (ligA)
03400 DNA repair and recombination proteins [BR:
pam03400
]
PANA_2759 (ligA)
Enzymes [BR:
pam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PANA_2759 (ligA)
DNA replication proteins [BR:
pam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PANA_2759 (ligA)
DNA repair and recombination proteins [BR:
pam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PANA_2759 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PANA_2759 (ligA)
MMR (mismatch excision repair)
DNA ligase
PANA_2759 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PANA_2759 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4874
5_3_exonuc
HHH
DZR_2
Prok-E2_C
Ned1_M
RNA_pol_A_CTD
A24_N_bact
Motif
Other DBs
NCBI-ProteinID:
ADD77926
UniProt:
D4GJV8
LinkDB
All DBs
Position
complement(3097917..3099935)
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQ
RVGAAPLMVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDDLVYCCELKLDGLA
VSLLYEDGLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVFMTQNG
FEKLNAEARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEMPRSHM
ARLQQFKAWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQDLQEKL
GFVARAPRWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILFPSHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLTRE
TLTGLDRMGAKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMD
ADLDALIAVQDVGTVVAKHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgtccaggaacacatcaccgaactgcgcacgacgctgcgccatcatgaatac
ctttatcacgttatggacgcaccggaagtaccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagcttgaagaacagcatcctgacctgattacgcctgactcacccacgcag
cgcgtcggggcggctcccttaatggtgtttgagcaggtccgccatgaagtgcctatgctg
tcactggataatgcctttgacgaagccagcttcagagcatttaacaagcgggtgcaggat
cggctaaaaagcagtgacgatctggtctactgctgtgaactcaaactggatggcctggcc
gtgagcctgttgtatgaagacggactgttaacccgtgcggcaacccgcggtgacggcaca
accggcgagaatattacaagcaacgtgcggacaatccgcgcgatcccactgcggctcaaa
ggcgagaacattcctgcccgcgtcgaagtgcggggcgaggtgtttatgacgcaaaacggc
tttgaaaagctgaatgcggaagcgcgccgcaccgaaggcaaagtctttgccaatccgcgc
aacgccgcggcaggttcactgcgccagctcgatccccgtattacggcaaaacgaccactc
acgtttttctgttatggcattggcctgctggaaggcggcgagatgccgcgcagccatatg
gcgcgtctgcaacagtttaaagcgtggggcttgccggtcagcgatcgtattcgtctggtt
cataacgtggatgaagcgctggccttttaccacgaggttgacgcgcagcgtgcagaactg
gggtttgacatcgacggcgtcgtgatcaaagtcgattctcaggatctgcaggagaagctg
ggctttgtcgcccgtgcgccgcgttgggcggtagcctttaagtttgccgctcaggagcag
atgaccatcgtgcgcgatgttgaattccaggtgggccgcactggcgcgattacgcctgtg
gcgcgtctggagccggtgcaggtcgctggcgtaatggtcagcaatgcgaccttgcataat
gccgatgagatagaacgtcttggtttgcgtattggcgacaaagttgtgattcgccgtgcc
ggtgacgtgattcctcaggtagtgaatgtcgttgtcagcgaacgccctgaagacgcgcgt
gaaatcctgttcccttcccactgtccggtatgcggatccgatgttgaacgcgtcgaaggc
gaagctgtcacacgctgtaccggcgggttgatctgtggtgctcaacgtaaagaagcgctg
aaacattttgtctcgcgccgcgccatggacgtcgaggggatgggcgataagattatcgat
caactggtagagaaagagtacgtcaagacgccggcagacctgtttcgattaacccgtgaa
accttaaccggcttggatcggatgggggcgaaatcggcgcagaatgtggtcgacgccctg
gaaaaagccaaatccactacgctggcgcgtttcctgtatgcgctcggtattcgcgaggtt
ggcgaagcgaccgcggctaacctggctaaccactttggcgagctacaaaaggtaatggat
gccgatctggacgcgctgatcgcagtgcaggatgtgggcaccgtggtggcgaagcacgta
cgtcactttatggaagaagagagcaatcgcgacgtgattcgccagctggtcgaagacatt
ggcatcaactggccccaggtgatggtggttaaagcggaagagattgacagtccgtttgca
ggcaaaaccgtggtgctcaccggctcgctgtcacagatgaaccgtgacgacgcgaaagcg
cgccttaccgaactcggcgcgaaagtcagtggaagcgtatcgaagaaaaccgatctgctt
atcgcgggcgaagcggccggttcaaaactggcgaaggcgcaggaactgggcatcgaagtg
atcgatgaagctgaaatgattcgtctgctgggagcctga
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