Pseudomonas amygdali: BKM19_011390 Help Entry BKM19_011390      CDS       T05354                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pamg  Pseudomonas amygdali Pathway pamg03030   DNA replication pamg03410   Base excision repair pamg03420   Nucleotide excision repair pamg03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pamg00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     BKM19_011390    03410 Base excision repair     BKM19_011390    03420 Nucleotide excision repair     BKM19_011390    03430 Mismatch repair     BKM19_011390  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pamg03032]     BKM19_011390    03400 DNA repair and recombination proteins [BR:pamg03400]     BKM19_011390 Enzymes [BR:pamg01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      BKM19_011390 DNA replication proteins [BR:pamg03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      BKM19_011390 DNA repair and recombination proteins [BR:pamg03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      BKM19_011390    NER (nucleotide excision repair)     GGR (global genome repair) factors      BKM19_011390    MMR (mismatch excision repair)     DNA ligase      BKM19_011390   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       BKM19_011390 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT 5_3_exonuc DNA_ligase_ZBD PTCB-BRCT Bep_C_terminal Motif Other DBs NCBI-ProteinID:  AVB14130 UniProt:  A0AB35QU01 LinkDB All DBs Position 2239192..2241555 Genome browser AA seq 787 aa AA seqDB search MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ RVGSAALSAFTQVRHEMPMLSLGNAFEESDMLEFDRRVTEGLDLPAGDLFGAGSKVQYSC EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLKGKGWPDVLEVRG EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA EIADTHIGVLETLKKWGMPVSRELKLANGVEECLDYYRDIGERRLTLSYEIDGVVFKVNN LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTCSVCGS HVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQ LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG LKLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRQT LPEKQAKSVRDFFDDSAHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE RMSRDVAKEKLETLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLT ELGVAVD NT seq 2364 nt NT seq  +upstreamnt  +downstreamnt atgaaggccgtcgaaacccgaatcctggaactgcgtgcagagctggatgagcacaactac cgctatcacgttctggatgagcccagcatcccggatgtcgagtacgaccgcctgtttcac gagctcaaggcccttgaggcagaaaacccgcatctggtcacgccggattcgccgacgcaa cgggttggcagtgccgctttgtcggcgttcacccaagtgcgacacgaaatgccgatgctc agcctgggtaacgctttcgaagaaagcgacatgctcgagtttgaccggcgggtaaccgaa gggctggatttgcctgccggggacctgtttggtgcgggcagcaaggtgcagtacagctgc gagcccaagctggacggtctggcagtcagcctgctgtatcgcgatggtgcgctggtacgc ggtgcgacgcgtggggacgggaccaccggcgaggacatcagcgtcaatgtacgcaccgtg cgcaacatcccgctcaagctgaaaggcaagggctggccggatgtgctggaagtgcgcggc gaagtgttcatgtccaaggcaggtttcgagcggctcaacgccagccagctggaaatcggc ggcaaaaccttcgccaacccgcgcaatgcagcggcgggcagcctgcgccaactggactcg aaaatcactgccaatcgtccgctggaattctgctgctatggcctggggcagacttcggcg gaaatcgccgacactcacatcggtgtgcttgaaacgttgaaaaaatgggggatgccggtc agtcgcgagctgaagctggcgaatggcgtcgaggagtgtctggactattaccgcgatatc ggtgagcggcgcctgacgctgagctacgagatcgacggtgtggtgttcaaggtcaacaac ctggctgcgcagcgcgaactgggctttcgcgcccgtgagccgcgctgggcgattgcccac aaattccccgccatggaagagctgaccgagttgctggatgtcgagttccaggtaggccgt accggtgcggtaacgccggtcgcgcgcctcaagccggtcaaggtggctggtgtcatggtc gccaacgccacgctgcacaacatggatgaagtggcgcggctcggcttgatgattggcgac acggtgatcatccgtcgtgccggtgacgtgattccgcaggtggtgcaggtggttgccgag cgccgccccgagaatgccagggcggtgcaggttccacagacctgttcggtgtgtggctcg catgtcgagcgcacgcagctgatcaaacgcagcaaaggcaaggaaaccgtcaccgagggc gcggtgtatcgctgtgtcgggcgtctggcctgcggtgcgcaactcaagcaggcgatcatt cattacgtatcgcgtcgcgccatggacatcgaagggctgggtgacaagaccatcgagcaa ctggtcgatgaaaaactcattggctcgcctgccgacttgtacaagctgaaatacgagcag atcatcgacctggaaggctttgccgaaatttccagcaacaagctgctcaaggcgattgcc gacagtcgacagccgaccctggcgcgcttcatctatgccttgggtattcctgatgtggga gaagagacggccaaggtgctggcgcgttcgctggcgtccctggaccgagtcaaacaggca ttgccggaagtcctgacgtacctgccggatgtcggtctggaagtcgcctacgaaattcac agcttcttcgaagacgagcacaaccgtaacgtcattgatgcgctgttgggcgaatgtgga ctgaaattgcaggaccagggcgagttgggcgccgagtttgcggccagcactacgcttgaa gggctgatcgacaaattacatatcccgtcggtagggccgggcgctgcacagaaactggct gacagattcggcacgctggaggccatcatcagcgccgattggctggacatgcgccagacg ctgccggagaagcaggccaaatcagtccgtgatttcttcgacgacagcgcacatgccgag cgtgcacgcgccatagaagcccagctcaaagacttcggcatgcactggcgcagcgagaaa aaaaccgtcgaaggcttgccgctggccggacagacctgggtactgacggggtcgctggaa cgcatgagtcgcgacgtcgccaaggaaaaactcgaaacccttggtgccaaagtctccggc tcggtctcggccaagacccacaccgtggttgcaggccccggtgcaggctcgaaactgacc aaggccaacgagctggggctgaccgtactggacgaagatgcgctgctcaaacgcctgacc gaactgggcgtggcggttgactga

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