Pseudomonas amygdali: BKM19_023045
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Entry
BKM19_023045 CDS
T05354
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BKM19_023045 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_023045 (nth)
Enzymes [BR:
pamg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BKM19_023045 (nth)
DNA repair and recombination proteins [BR:
pamg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BKM19_023045 (nth)
Prokaryotic type
BKM19_023045 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
Ogg-HhH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AVB16111
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All DBs
Position
4722422..4723060
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AA seq
212 aa
AA seq
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MNAAKRQEIFRRLHEDNPDPKTELAYTTPFELLIAVILSAQATDVSVNKATAKLYPVANT
PQAIYDLGVEGLSEYIKTIGLYNSKAKNVIETCRMLVELHNSEVPQTREALEALPGVGRK
TANVVLNTAFRQVAMAVDTHIFRVSNRTGIAPGKNVVEVEKQLMKFVPKNYLLDAHHWLI
LHGRYVCQARKPRCGSCRIEDLCDYKEKTSDD
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctgcaaaacgtcaggaaatctttcgcaggctgcatgaggacaatccggacccg
aaaaccgaactggcctacaccacgccttttgagttgttgatagccgttatcctttctgcc
caggccactgacgtgagcgtcaacaaagccacggcgaagctgtacccggtcgccaacacg
ccacaagccatatatgacctgggcgttgaagggctgtccgagtacatcaagacaattggc
ctctacaacagcaaagccaaaaacgtaattgaaacctgccggatgctggtggagttgcat
aacagcgaagtaccgcagacccgagaagcgctcgaggccttaccgggcgtaggacgcaag
actgccaatgtcgtgctcaacaccgctttccgtcaggtcgcgatggctgtagacactcac
atctttcgcgtcagcaaccgtacgggcatcgcaccagggaaaaatgtggtggaggtcgag
aagcagttgatgaaatttgtgcccaagaactatctgctcgatgcgcaccactggctgatc
ctgcacggacgctacgtttgccaggcacgcaagcccagatgcggcagttgccgtatagaa
gacctgtgcgattacaaggagaaaacgtccgacgattga
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