Pseudomonas amygdali: BKM19_024200
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Entry
BKM19_024200 CDS
T05354
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg00300
Lysine biosynthesis
pamg00550
Peptidoglycan biosynthesis
pamg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
BKM19_024200
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
BKM19_024200
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pamg01011
]
BKM19_024200
Enzymes [BR:
pamg01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
BKM19_024200
Peptidoglycan biosynthesis and degradation proteins [BR:
pamg01011
]
Precursor biosynthesis
Amino acid ligase
BKM19_024200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
AVB16310
LinkDB
All DBs
Position
complement(4968329..4969792)
Genome browser
AA seq
487 aa
AA seq
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MAFNLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVA
YEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVA
QALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHG
LDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINLDDAFGRE
LAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNV
LSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDALEKVLEAL
RPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDIRPGF
AAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEIDGQRHPFSDLQEAATALA
AWGAAND
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcctttaatctgagcaagattttcgctcacaccgatcgcgaccccttgattcgcgag
ttgactctcgacagccgcaatgtccgtccgggcgatctgtttctggccgtgccgggtatc
aaggtcgatggccgtgcgcatattgccgacgcgctcaagcgtggcgctgcggctgtggct
tacgaagtagaaggctcgaccgttctgccgatcaccgacgtgccgctgatcccggtcaag
gggctcgccgcgcagttgtccgatattgccggccgcttctacggcgatccgagccgcagc
ctgaatctggtaggcgttaccggcaccaacggcaagaccagcgtcactcaactggttgcc
caggcgcttgatgcactgggtcagcactgcggcatcgtcggcacgctgggcacaggcttc
tacggcgcgttgcaaagcggccgtcataccacgcccgacccgatagccgttcaggcgacg
ctgaccgacctgaaaaaggccggtgctcgcgcagtggcaatggaagtgtcgtctcatggg
ctggatcaagggcgggcgacggcgctggcgtttgatgtggcggtgctgaccaatctgtcc
cgtgatcacctggattatcacggcaccatggaagcgtacgctgccgccaaggccaagctg
tttgcgtggtccaacctgaaatgccgggtaatcaacctggatgatgctttcggtcgtgaa
ttggccggtatcaagcaagagtcgcggttgatcacctatagccagctggacagctcggcc
tacctgtattgccgcgatgcgaaattcgatgacgatggcgtgcgcgctacgctggtcacg
cctcagggcgagcacttcctgcgcagcagcctgctgggtcgcttcaacctgagcaacgtg
ctgtctgcggtgggcgctttgctgggcctggattatgcgctggacgaaattctcaaggtg
ttgccgaaactcgaaggcccggtcgggcgcatgcagcgtctgggcggtgccgacaagccg
ctggtggttgtcgactatgcgcatactccggatgcgctggaaaaagtcctcgaagcactg
cgcccgcacgccaaaggccgcctgttgtgcctgttcggctgcggcggtgatcgtgatcgc
ggcaagcgtccgctgatggctgaagtggtcgaacgcctggccgacggtgtgtgggtcacc
gacgacaacccgcgctccgaatcgccagctagtatttttgacgatatccgccctggcttc
gctgctgctgacaaggtgcgcttcatcgaaggtcgcggccaggccattgccgagttgatc
gccagcgccaatgccgatgatgtcgtagtcctggccggtaaagggcatgaggattatcag
gagatcgacggtcagcgccatccgttctctgacctgcaagaagctgccacggcgcttgct
gcgtggggggctgcgaatgattaa
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