Paracoccus aminophilus: JCM7686_2218
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Entry
JCM7686_2218 CDS
T02792
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pami
Paracoccus aminophilus
Pathway
pami03030
DNA replication
pami03410
Base excision repair
pami03420
Nucleotide excision repair
pami03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM7686_2218
03410 Base excision repair
JCM7686_2218
03420 Nucleotide excision repair
JCM7686_2218
03430 Mismatch repair
JCM7686_2218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pami03032
]
JCM7686_2218
03400 DNA repair and recombination proteins [BR:
pami03400
]
JCM7686_2218
Enzymes [BR:
pami01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JCM7686_2218
DNA replication proteins [BR:
pami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JCM7686_2218
DNA repair and recombination proteins [BR:
pami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JCM7686_2218
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM7686_2218
MMR (mismatch excision repair)
DNA ligase
JCM7686_2218
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM7686_2218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
MutL
PTCB-BRCT
GreA_GreB_N
Motif
Other DBs
NCBI-ProteinID:
AGT09297
UniProt:
S5XVK1
LinkDB
All DBs
Position
complement(2288221..2290491)
Genome browser
AA seq
756 aa
AA seq
DB search
MAEHVSAERAARLPVENLTKAEAAHELAGLIDAIGKANIAYHRDDAPVISDAEYDADKRR
LAEIEARFPDLRSSDSPSEQVGAAPDGRFAKVPHRQRMLSLENAFSEGEVQDFAQRIRSF
LNLPARAPLAFTAEPKIDGLSLSLRYENGVLVQAATRGDGAVGENVTANARTIADIPHEL
AGSGWPEVLEIRGEVYMTHTEFVRLNENEAGRTFANPRNAAAGSLRQLDPTITAARPLRF
FAYAWGEVSAPFAATQMEAVAQMRAFGFQTNPLMRLCDSVDEMIAVWRGIEQQRAALGYD
IDGVVYKVNDLALQTRLGMRSTTPRWALAHKFPAETAWTLLEDIDIQVGRTGALSPVARL
APITVGGVVVSNATLHNEDYIAGRDSSGEEIRGGRDIRKGDWVMVYRAGDVIPKIADVDL
TRRPEGSEPFAFPQTCPICQSPAVREEGDSVRRCTGGLICPAQAVEKLRHFVSRAAFDIE
GLGAKVVEELFNDGWIAEPADIFTLETRFGPGQIQQLKNREGWGETSAAKLFEAINRRRE
ITLARLLFALGIRHVGEVGAQDLARHYLSWTGIVAALDLARPAVLAHRAADEAALEEREI
AARRNRRARISEARAQAIAALKVEPAAQAAWDDLISADGIGPVMAMSLSDALANPRERAA
IDRLVSELTTIQPPEARATDSAIAGLTIVFTGTLERMTRAEAKARAEALGAKVAGSVSAK
TDILVAGPGAGSKATKAAALGVRVIDEDQWMVIAGQ
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcacgtaagcgcggaaagggcggcccgtctgcccgtcgaaaatctcaccaag
gccgaggccgcgcatgagctggccgggctgattgacgcgatcggcaaggcaaacatcgcc
tatcaccgcgatgacgcgccagtcatcagtgacgccgaatatgatgcggacaagcgacgt
ctggccgagatcgaggcgcgctttcccgatctgcgctccagcgacagcccgagcgagcag
gtcggcgccgctccggatgggcgttttgccaaagtgccgcatcgccagcgcatgttgtcg
cttgaaaacgccttctcggaaggggaggtgcaggatttcgcccaacgcatccgctctttc
cttaatcttccggcccgcgcgccactggctttcaccgccgaacccaagatcgacggcctc
tcgctgtcgctgcgctatgaaaatggcgtgctggttcaggccgcgacccggggcgatggt
gctgtcggcgaaaatgtgaccgccaatgcgcgcacgatcgcggatatcccgcacgagctt
gcggggtcgggctggcccgaggtgctcgagatccggggcgaggtctatatgacccatacg
gaattcgtgcggttgaacgaaaacgaggcggggcgcacctttgccaatccgcgaaatgcg
gcggcgggctcgctgcgccaactcgacccgacgatcacggccgcccgtccgctgcgcttc
tttgcctatgcttggggcgaggtctctgcacccttcgccgcgacccagatggaagcggtc
gcgcagatgcgggcctttggtttccagaccaacccgctcatgcgcctgtgcgacagcgtc
gacgagatgatcgcggtctggcgcgggatcgaacaacagcgcgccgcgcttggttatgac
atcgacggcgtcgtctataaggtcaacgaccttgcccttcagacccgcctcgggatgcgc
tcgaccacgccgcgttgggctttggcgcataaattcccggccgaaaccgcctggacgctg
ttggaggacatcgacattcaggtcggtcgcaccggggcgctgtcgccggtggcacgtctt
gcgccgattaccgtgggcggggtcgtcgtctcgaatgcaacgctgcacaatgaggattac
atcgccgggcgcgattcctcgggcgaagagatccggggtggtcgcgacatccgcaagggc
gattgggtcatggtctatcgcgcgggcgatgtgatcccgaaaatcgccgatgtcgatctg
acgcgccgccccgaagggtccgagcctttcgcttttccgcaaacctgcccgatttgccaa
tcccccgccgtgcgcgaagagggcgattcggtgcgtcgctgcaccggcggtctgatctgc
ccggctcaggcggtcgagaagctgcgccatttcgtcagccgtgcggcctttgacatcgag
ggccttggcgcgaaagtggttgaggagctctttaacgacggctggatcgccgagcccgcg
gatatcttcacgctggaaacccgcttcggcccggggcagatccagcagctcaagaaccgc
gaaggctggggcgagaccagcgcggccaagcttttcgaggcgatcaaccgccgccgcgag
atcacgctggcgcgcctcttgttcgcgctcggcatccgccatgtcggcgaggtcggagct
caggatctggcgcggcattatctgagctggacggggatcgtggcggcgctggatctggcc
cgtcccgccgttctggcccatcgcgccgcagatgaggcggcccttgaagagcgcgagatc
gccgcgcgccgcaaccgtcgcgcccggatttccgaggcgcgcgctcaggcgattgccgcg
ctcaaggtcgagcctgcggcgcaggccgcttgggacgatctgatttcggccgatggcatc
gggccggtcatggcgatgtcgctctcggatgctttggccaatccgcgtgagcgcgcggcg
attgaccggctggtctctgagctcaccacgatccaaccgcccgaggcgcgtgcgaccgac
agcgcgattgctgggctgacgattgttttcaccggcacgctcgagcggatgacgcgggcc
gaggccaaggcgcgggccgaggctctgggggcgaaggtggcgggctcggtttccgccaag
accgatattctggtcgcggggccgggggcgggctcgaaggccaccaaggccgccgcactt
ggcgttcgcgtcatcgacgaggatcaatggatggtgattgcggggcaatga
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