Planococcus antarcticus: BBH88_16495
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Entry
BBH88_16495 CDS
T04428
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pana
Planococcus antarcticus
Pathway
pana03030
DNA replication
pana03410
Base excision repair
pana03420
Nucleotide excision repair
pana03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBH88_16495 (ligA)
03410 Base excision repair
BBH88_16495 (ligA)
03420 Nucleotide excision repair
BBH88_16495 (ligA)
03430 Mismatch repair
BBH88_16495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pana03032
]
BBH88_16495 (ligA)
03400 DNA repair and recombination proteins [BR:
pana03400
]
BBH88_16495 (ligA)
Enzymes [BR:
pana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBH88_16495 (ligA)
DNA replication proteins [BR:
pana03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBH88_16495 (ligA)
DNA repair and recombination proteins [BR:
pana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBH88_16495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBH88_16495 (ligA)
MMR (mismatch excision repair)
DNA ligase
BBH88_16495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBH88_16495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ANU11737
UniProt:
A0A1C7DJY2
LinkDB
All DBs
Position
1011862..1013868
Genome browser
AA seq
668 aa
AA seq
DB search
MDRMKAEQRVNELNELLRNYGHAYYVLDKPAVPDAIYDQLLNELLELETLYPDLVFPDSP
TQRIGGIPISNFDKVTHDRPMLSLSNVFGEEDLLEFDKRVRSGAGDEIEYVCELKIDGLA
VSLLYEDGKFVKGATRGDGRIGEDITVNLRTIRAIPLKLEQPVTLEVRGEVFMPKKSFHV
LNEQRGERGEELFANPRNAAAGSLRQLDPKVAASRNLDVFIYGIGGDGETYGLSEHNESL
SYLAGLGFKTNQERHVAKSVEEVLAYIEKWTENRTKLSYEIDGIVIKVNRFLHQQDLGFT
AKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNEDL
IKEKDIRIGDKVIIRKAGDIIPEVVSVIVEQRTGDELPFEMPKNCPACDSELNRIEGEVA
LRCVNPQCPAQITEGLIHFVSRNAMNIDGLGEKVIEQLYREDLIKDISDIYKLNKEQLLE
LDRMGDKSASNLIAAIEDSRSNSMEKLLFGLGIRHVGERGARILSEHFGSMERLMEATKE
ELVEIHEIGEKMADSVVTYFDNEEVRTLMERLREAGVNLTYTGTRVRVEAGANAFAGKKI
VLTGKLEQLTRQEASVQIEALGGKLSGSVSKKTDLLIAGEEAGSKLDKARELKVDIWDEA
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcatgaaagcggaacaacgtgttaatgaattgaacgaattgcttcggaactat
ggacatgcttattacgttctagataagccggctgttccggatgccatctacgatcaatta
ctgaatgaattgctcgaattggaaacactttatccagatttggtgtttccggattcacct
acacagcgaattggaggaataccgatttctaattttgataaagtgacgcacgaccgaccg
atgctcagcttatcgaatgtttttggtgaagaggatcttcttgaattcgataaacgggtg
cgcagcggtgcaggtgatgaaatcgaatatgtctgcgagttaaaaattgatggccttgca
gtatcacttctctatgaagacggtaaattcgttaaaggagcaacgcgcggagacggccgt
atcggtgaagacattaccgttaacctgcggactattcgcgctatcccgctaaaattagag
caaccagtaacgcttgaagtgcgtggcgaagtcttcatgccgaaaaaatcctttcatgtc
ttgaacgaacagcgtggtgagcgaggcgaagagttatttgctaatccgcggaacgctgcg
gctggatcgcttcgccagttagatccaaaagttgcagcgagtcgtaacttagatgttttt
atttacggaattggtggcgatggagagacctatggcttgtctgagcacaatgagtcgcta
agttatttggcagggcttgggtttaaaaccaatcaggaacgccatgtcgcaaaaagcgtt
gaagaagtattagcctatattgaaaagtggacagaaaaccggaccaaactatcctacgaa
attgacggcatcgttatcaaagtcaatcgctttcttcaccagcaagatctcgggtttacg
gcgaaaagtccaaaatgggcaactgcttataaatttcctgcagaagaagtcatgacgacc
gttcgtgacattgagttgagtgtcggacggaccggagttgtgacacccaccgccatactg
gatccagtatctgttgcagggacgaccgtccaacgggcttctttgcacaacgaagattta
attaaagaaaaagacatccgaatcggcgataaagtcattatccgaaaagccggagacatt
attccggaagtggtttcggtgattgttgaacaacgcacaggtgacgaacttcctttcgaa
atgccgaaaaattgtccggcctgcgacagtgagctaaaccgcatagaaggggaagtggca
cttcgctgcgtcaatccacaatgtcctgcccaaattacagaaggcctaattcattttgta
tctcgtaatgccatgaatattgacgggcttggggaaaaagtgatcgagcagttataccgg
gaagatttgataaaggatatttccgatatttataagttgaacaaagaacaattgctggaa
ctggatcgtatgggcgacaaatctgcttctaatttaattgcggcaatcgaagattctaga
agcaattcgatggagaaattactgttcggtctgggcatacgtcatgtaggcgaaagaggg
gcgcggattttatccgagcatttcggttcaatggagcggctgatggaagcgacgaaagaa
gagttagttgaaattcatgaaattggtgaaaaaatggccgattccgtcgtcacttatttc
gataacgaagaagttcggacattgatggaacgtttgcgtgaggctggcgtcaatttaaca
tatacaggtacacgagtccgagtggaggccggggccaacgcattcgcaggcaaaaaaatt
gtgttgacaggtaagttggaacaattgacccgccaggaagcaagcgtgcaaatcgaagcg
cttggcggcaaactctcaggcagcgtcagcaaaaaaactgacttgttgattgctggggaa
gaagcgggttccaagctcgacaaagcacgtgaactgaaggtagacatatgggacgaagcg
cgtctcgttgaggaattgaataaataa
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