Paenisporosarcina antarctica: E2636_02650
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Entry
E2636_02650 CDS
T05927
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
panc
Paenisporosarcina antarctica
Pathway
panc03030
DNA replication
panc03410
Base excision repair
panc03420
Nucleotide excision repair
panc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
panc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2636_02650 (ligA)
03410 Base excision repair
E2636_02650 (ligA)
03420 Nucleotide excision repair
E2636_02650 (ligA)
03430 Mismatch repair
E2636_02650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panc03032
]
E2636_02650 (ligA)
03400 DNA repair and recombination proteins [BR:
panc03400
]
E2636_02650 (ligA)
Enzymes [BR:
panc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E2636_02650 (ligA)
DNA replication proteins [BR:
panc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E2636_02650 (ligA)
DNA repair and recombination proteins [BR:
panc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E2636_02650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2636_02650 (ligA)
MMR (mismatch excision repair)
DNA ligase
E2636_02650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E2636_02650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QBP40116
UniProt:
A0A4P6ZX84
LinkDB
All DBs
Position
529615..531621
Genome browser
AA seq
668 aa
AA seq
DB search
MDRVQLEQRVKELNQLLHDTGYAYYVLDQPLVPDAVYDQYLQELMAIESEFPDLIYPDSP
TQRVGGTILQGFHKVSHTYPMLSLSNAFGRDDLDDFDRRIRANIGDDFSYVCELKIDGLA
ISLSYEDGVFVRGATRGDGRIGEDITENLKTIRSIPLRLKKPITLEVRGEAYMPKKSFNS
LNEFRVANEEEKFANPRNAAAGSLRQLDPKIAASRNLAIFVYGIGGDGEAYQLDGHAQAL
DYLDDLGFQTNKERQSCQSIDEVQAYIEKWTADRPNLPYEIDGIVIKINRYVHQQDLGFT
AKSPRWATAYKFPAEEVVTTLLNIELTVGRTGALTPTAILQPVQVAGTTVGRASLHNEDV
IREKDVRIGDTVIIRKAGDIIPEVVAVVLGERKEDSTAYKMPTHCPVCESELVRIEGEVA
LRCVNPQCPAQITEGLIHFVSRNAMNIDGLGEKVVEQLFREGLIHDVSDMFTLTKDQLIQ
LDRMGDKSATNLITAIEASKQNSMERVLFGLGIRHVGEKAAKILAEEFEDMKTLAQATPE
QLVAVHEIGDKMADSVISYFDNEKVKDLIERLDDLGVNLSYTGKKVDLSNLDHVLTGKTV
VLTGKLEQLTRQEAKEKIEQVGGTVSGSVSKKTDIVIAGEDAGSKLDKANTLGIPVWDEN
RLIEELNQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtacaattagaacaacgtgtaaaagaactcaatcaactattacacgataca
ggctatgcctattatgtgctagatcaaccgctcgtacctgacgcggtttacgaccaatat
ttacaggaactcatggcaattgaaagtgaatttcctgatttaatttatccggattctcca
actcaacgtgtgggaggaacgattcttcaaggatttcataaagtatcacacacatatccg
atgctaagtttatcaaatgcatttggtcgagacgatttagacgattttgacagacgtatt
cgagcaaatattggggatgatttttcctatgtttgtgaattaaaaatagatggtttggcc
atttcacttagctatgaagatggtgtctttgttcgcggggcaactcgtggtgatggtcgt
attggggaagatattacggagaatttaaaaacgattcgttcgattcccttacgtttaaaa
aaacccatcacgcttgaagttcgtggagaagcctacatgcccaaaaaatcatttaactct
ttaaatgaatttcgtgtggcaaacgaagaagagaaatttgccaatccgcgaaatgcagca
gctggatctttgcgtcaacttgatccgaaaatcgctgcaagtcgaaaccttgccattttt
gtttatggaattggtggagacggagaagcatatcaactagatggtcacgcacaagctctc
gattatttagatgacttaggatttcaaacgaataaggaacgacaatcatgccagtccata
gacgaggtacaagcgtatatagaaaagtggacagccgatcgaccaaatttaccatatgaa
atcgatggaattgtcattaaaataaatcgttatgtacatcaacaagatctaggatttaca
gcgaaaagtccaagatgggcaacggcgtacaaattcccagctgaagaagtcgttacgaca
ctgctcaatattgaattaacggtaggtcgtacaggtgccttaacgcctactgcgatacta
caaccggtgcaagtggcaggaacgacagtgggacgtgcttccttacataatgaagatgtg
attcgtgaaaaagacgttcgcattggagacacggtcatcattcgtaaagctggcgacatt
atccctgaagttgtggcggtggtacttggagaacgtaaagaggattcgactgcgtataaa
atgcccactcattgtcctgtttgtgaaagtgaacttgttcgaatcgaaggggaagtggct
cttcgttgtgtgaacccacaatgtcctgctcaaatcactgaaggactgatacattttgtg
tcacgcaatgcgatgaatatcgatggactcggtgaaaaagtagtggagcagttgtttcgt
gaaggacttattcatgacgtctcggatatgtttacgctaacgaaagatcaattaattcaa
ctggatcgtatgggtgataaatcagccactaatctaatcactgcaattgaagcatcgaaa
caaaattcaatggaacgtgtgttatttggattaggaatacgccatgttggggagaaagcg
gccaaaattttggctgaagaattcgaagatatgaagacacttgcgcaagcaactccagaa
caactcgttgcggttcatgaaatcggtgacaaaatggcagattcggttattagctatttt
gacaatgaaaaagtgaaagatttaattgaacgacttgatgatctaggagtgaacttgtcc
tacacaggaaaaaaagtagatctatccaacttagatcatgtgttaactggtaaaacagtg
gtgttaaccggaaaattggaacaattgacacgacaagaagcaaaagagaaaatagaacag
gtaggcggaaccgtctctggtagtgtcagtaaaaaaacagacattgtcatcgctggtgaa
gatgcaggttcaaaactagataaagccaatactttaggcattccagtatgggatgaaaat
cgcctgattgaagaattaaaccagtga
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