Pandoraea sp. XY-2: DRB87_20135
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Entry
DRB87_20135 CDS
T06086
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pand
Pandoraea sp. XY-2
Pathway
pand00300
Lysine biosynthesis
pand00550
Peptidoglycan biosynthesis
pand01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DRB87_20135
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DRB87_20135
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
DRB87_20135
Enzymes [BR:
pand01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
DRB87_20135
Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
Precursor biosynthesis
Amino acid ligase
DRB87_20135
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
QBC33174
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Position
complement(4442579..4444162)
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AA seq
527 aa
AA seq
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MGTVTPTPHNPATLALIADAAERATLTQAWDWLRLTVPAGAALQADSRRVTSGDVFVAYA
VKGADSRGFIADAVERGAAAVLWQSDDFTWPASLASLANVPAFGVPRLDWLAGPLAALWC
GEPSVGMTTLGVTGTNGKTSCSQWIAQLLSKAGKRSAVIGTLGSGFPGHLTMTGFTTPDA
VQLQRSLSDLRAQGAAAVAMEVSSHGLYQGRVNGVAFDIAVFTNLTQDHLDYHGTMAEYE
AAKTRLFDWPGLKAAVINRDDAMGQRLLARLAGKTPVYEYGLHGDAKSAHGNVVLRAEDI
RATTAGTRFTLYLGDHSQQITVPLIGEFNVSNALAVLGAALAAGVPQDAAIAGLAALTPV
SGRMEQIGQPGQPLVVIDYAHTPDALDKTLDALRPVASARGGKLVCVFGCGGDRDTGKRP
QMGAVAERLADAVVLTSDNPRTEVPADIMAQIAAGLAHPDAARCIEDRASAILQAVRGAQ
AADVVLIAGKGHESTQEIMGKKRPFSDQEHARLALAARATTVRGGGE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccgtgaccccgacgccgcataaccccgccacgctcgcgctcatcgcagatgcc
gccgagcgcgccacgctgacgcaggcgtgggactggctgcgcctgacagtgccggccggt
gcggcgctgcaggccgacagccgtcgcgtgacgtcgggtgatgttttcgtcgcgtacgcc
gtcaaaggcgccgacagccgcggtttcatcgccgacgccgtggagcgcggcgctgccgca
gtgctttggcagagcgatgacttcacctggccggcgtcgctggccagtctcgcgaacgtg
ccggcgttcggcgtgccgcgacttgactggctggcgggcccgctggcggcgctctggtgc
ggtgagccgagcgttggcatgacgacgctgggcgtaaccggcacgaacgggaagacatcg
tgcagccagtggatcgcgcaactgttgtcgaaggcgggcaagcgcagcgcggtgatcggc
acgctgggcagcggttttcccgggcatctgacgatgaccgggttcaccacgcccgatgcg
gtccagttgcaacgcagcctgagcgacctgcgggcgcagggcgcggcggcggtcgcgatg
gaagtgtcgtcgcacggtctctaccagggacgcgtgaacggcgtggccttcgacatcgct
gtctttaccaatctgacgcaagaccatctcgattaccacggcacgatggccgagtacgag
gcggcgaagacacgtctgttcgactggccgggcctcaaggcggccgtcatcaatcgcgac
gatgcgatggggcaacgcctgctcgcgcgtctggccgggaagacgccggtctatgaatac
ggcctgcatggcgacgcgaagtcggcgcatggcaacgttgtgctgcgcgccgaggatatc
cgcgcgaccactgcaggtacgcgcttcacgctgtatctcggcgatcacagtcagcagatc
accgtgccgctcatcggcgaattcaatgtgagcaacgcgctcgccgtgctgggtgcggcg
ctcgccgccggggtgccgcaagacgccgccattgccgggctcgccgcactcacccccgtg
tccgggcgtatggagcaaatcggacagccggggcagcccctggtcgtcatcgactacgcg
cacacccccgacgcactcgacaagacgctcgacgcgttgcggccggtcgcctcggcgcgt
ggcggcaagctcgtctgtgtgttcggctgcggtggtgaccgcgatacgggcaagcgtccg
caaatgggcgcagtggcggagcgcctggccgacgccgtcgtgctcacgagcgacaacccg
cgcacggaagtgccggccgacatcatggcgcaaatcgccgcgggccttgcgcacccggac
gcggcacgctgtatcgaagaccgggcgagcgcgattctgcaggccgtgcgcggtgcgcaa
gccgccgatgtcgtgctcatcgccggcaagggacacgaaagtacgcaggaaatcatgggt
aagaaacggccgttctccgatcaggagcatgcgcgtctggcactcgccgcgcgtgcgacc
accgtgcgcggaggtggcgaatga
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