Pantoea sp. X85: P6287_13925
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Entry
P6287_13925 CDS
T10770
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pane Pantoea sp. X85
Pathway
pane03030
DNA replication
pane03410
Base excision repair
pane03420
Nucleotide excision repair
pane03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pane00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P6287_13925 (ligA)
03410 Base excision repair
P6287_13925 (ligA)
03420 Nucleotide excision repair
P6287_13925 (ligA)
03430 Mismatch repair
P6287_13925 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pane03032
]
P6287_13925 (ligA)
03400 DNA repair and recombination proteins [BR:
pane03400
]
P6287_13925 (ligA)
Enzymes [BR:
pane01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P6287_13925 (ligA)
DNA replication proteins [BR:
pane03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P6287_13925 (ligA)
DNA repair and recombination proteins [BR:
pane03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P6287_13925 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P6287_13925 (ligA)
MMR (mismatch excision repair)
DNA ligase
P6287_13925 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P6287_13925 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DUF4874
S-Me-THD_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WFL66457
LinkDB
All DBs
Position
complement(2977244..2979262)
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMVQLRELESAHPDLITPDSPTQ
RVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSTDELTYCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFITESG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDSRITAKRPLTFFCYGFGLLEGGEMPASHW
QRLQQFKAWGLPVTDRIRLAHSADEVLAFYRQVEQERPSLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPAETREIVFPGHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVLTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELEKVMN
ADLDALIEVQDVGKVVATHVRNFMDEESNRAVIRDLTEEIGVHWPQVEVVNVEEIDSPFA
GKTVVLTGSLSQMNRDDAKERLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcggttcaggagcagatcaccgcgctgcgcaccacgttacgtcaccacgaatat
ctctaccacgtgatggatacgccggaaattccggatgcagagtatgaccgattgatggtt
cagctgcgcgagctggaaagcgcacatcctgatttgattacccctgattcacccacccaa
cgcgtgggtgcggcaccgctggcggcttttgagcaagtgcgtcatgaagtgccgatgtta
tcgctggacaacacctttgatgaagcgggcttccttgcctttaataaacgcgtgcaggat
cgccttaaaagcactgacgaattgacttactgctgcgagctcaagctggatggtctagcc
gtgagcttgctgtatgaagatggccttctggtgcgtgcggcgacgcgcggagatggcacc
accggcgagaacatcacggcgaacgtgcgcacaattcacgccattccgctgcggctgcat
ggcgataacatccccgcacgcgttgaagtgcgtggcgaagtgtttatcaccgaaagcggt
tttgaaaagctgaatgaagaagcacgtcgcaccggcgcgaaagtctttgctaacccacgc
aacgccgcggccggttcactgcgccagctcgattcgcgcatcaccgctaaacgtccactg
accttcttctgctacggttttggtctgctggaaggcggtgaaatgcctgccagccattgg
caacgtctgcaacagtttaaggcgtggggattgccagtcaccgatcgtattcgcctggca
cacagcgccgatgaagtgctggcgttttatcgtcaggttgagcaggagcgcccgtcgctc
ggcttcgatatcgatggcgtggttatcaaggtcgattcgcaggcgctgcaggagcagctc
ggctttgtggcgcgagcgccgcgctgggctgtagcctttaaattcccggcgcaggaacag
atgacgttcgtgcgcgatgtcgaattccaggtgggccgcaccggcgcgattacgcccgtc
gcgcgtctggagccggttcaggttgcgggcgttgtggtaagtaatgccacgctgcacaac
gccgatgaaattgcccgactgggtttgcgcattggcgacaaggtggtgattcgccgcgcc
ggtgacgtgattccgcaagtggtcaacgtggtggaatcggagcgcccggcagagacgcgt
gaaatcgtcttcccaggtcattgcccggtgtgcggttcagacgttgaacgcgtggaaggt
gaagttgtgacgcgctgcaccggcggcctgatttgtggcgcgcagcgtaaagaagcactt
aaacacttcgtttcgcgtcgtgcgatggatgtcgatggcatgggcgataagatcatcgat
cagttggtggagaaagagtacgtcttaacgccagccgatctgttccgccttactgccggt
aagctaaccggactcgatcgcatgggccctaaatcggctcagaacgtggttgatgcgctg
gaaaaggccaaatccaccacgctggcacgtttcctctatgcgctgggtattcgcgaagtg
ggcgaagccactgccgccaaccttgccaatcactttggcgagctggaaaaggtgatgaac
gccgatctcgatgcgctgattgaagtacaagatgtcggcaaagtggtggcgacgcatgtg
cgtaactttatggatgaagagagcaaccgcgccgttattcgcgatcttactgaagagatt
ggcgtgcactggccgcaggttgaagtggtcaatgtcgaagaaattgatagtccatttgcc
ggtaaaaccgtggtactgaccggctctctgtcgcagatgaatcgcgatgatgccaaagag
cgtctggtagcgttgggcgctaaagtgagcggtagcgtgtcgaagaaaaccgatttgctg
attgcgggggaagcggccggttccaagctggcgaaagcgcaggagctcggcattccggtg
atcgacgaagcggaaatgattcgcctgctcggagcgtaa
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